Difference between revisions of "TSS:Hg 10300.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|Fbx44= | |Fbx44= | ||
|Fbxo6a= | |Fbxo6a= | ||
| − | |all_trans= | + | |all_trans=HGNC:13581 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=11654436 | |end=11654436 | ||
|end_of_center_position=11654430 | |end_of_center_position=11654430 | ||
| − | |entrez_id= | + | |entrez_id=26232 |
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias= | + | |gene_alias=FBG1{{!}}FBX2{{!}}Fbs1{{!}}NFB42{{!}}OCP1 |
| − | |gene_description=F-box protein | + | |gene_description=F-box protein 2 |
|gene_id=26232 | |gene_id=26232 | ||
|gene_name=F-box protein 2 | |gene_name=F-box protein 2 | ||
| Line 22: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:13581 | |hgnc_mgi_id=HGNC:13581 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000116661 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_012168 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_012168 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.132753 |
| − | |num_trans= | + | |num_trans=26232 |
|species=human | |species=human | ||
|start=11654422 | |start=11654422 | ||
|start_of_center_position=11654429 | |start_of_center_position=11654429 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(GGCCTTTAAGAG,-,0.00),-33(GCCTTTAAGAGG,-,0.00),-32(CCTTTAAGAGGC,+,0.00) |
| − | |transcript_name=BC096747 AK313019 | + | |transcript_name=ENST00000354287.5 BC096747 AK313019 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10300.1 | |tss_id=hg_10300.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9UK22 |
}} | }} | ||
Latest revision as of 18:39, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 11654429 |
|---|---|
| End of the center position in the TSS region: | 11654430 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000354287.5 BC096747 AK313019 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26232 |
| All_trans: | HGNC:13581 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_012168 |
| Entrez ID: | 26232 |
| Nearest Unigene: | Hs.132753 |
| Nearest Refseq: | NM_012168 |
| Nearest Ensembl: | ENSG00000116661 |
| Gene Name: | F-box protein 2 |
| Gene Alias: | FBG1|FBX2|Fbs1|NFB42|OCP1 |
| Gene Description: | F-box protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GGCCTTTAAGAG,-,0.00),-33(GCCTTTAAGAGG,-,0.00),-32(CCTTTAAGAGGC,+,0.00) |
