Difference between revisions of "TSS:Hg 10474.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RBM15C= | |RBM15C= | ||
|SHARP= | |SHARP= | ||
| − | |all_trans=BC012991:69 | + | |all_trans=LF357213:54 MA592790:54 BC012991:69 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| − | |distance= | + | |distance=54 |
| − | |distance_to_tss=- | + | |distance_to_tss=-12846 |
|end=15834868 | |end=15834868 | ||
|end_of_center_position=15834861 | |end_of_center_position=15834861 | ||
|entrez_id=23013 | |entrez_id=23013 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=HIAA0929 | + | |gene_alias=HIAA0929{{!}}MINT{{!}}RBM15C{{!}}SHARP |
|gene_description=spen family transcriptional repressor | |gene_description=spen family transcriptional repressor | ||
|gene_name=SPEN | |gene_name=SPEN | ||
| Line 20: | Line 20: | ||
|nearest_refseq=NM_015001 | |nearest_refseq=NM_015001 | ||
|nearest_unigene=Hs.744843 | |nearest_unigene=Hs.744843 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=15834853 | |start=15834853 | ||
|start_of_center_position=15834860 | |start_of_center_position=15834860 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF357213 MA592790 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10474.1 | |tss_id=hg_10474.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:57, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 15834860 |
|---|---|
| End of the center position in the TSS region: | 15834861 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF357213 MA592790 |
|---|---|
| Distance: | 54 |
| Num_trans: | 3 |
| All_trans: | LF357213:54 MA592790:54 BC012991:69 |
TATA-Box annotation
| Distance to TSS: | -12846 |
|---|---|
| Nearest PromoterID: | NM_015001 |
| Entrez ID: | 23013 |
| Nearest Unigene: | Hs.744843 |
| Nearest Refseq: | NM_015001 |
| Nearest Ensembl: | ENSG00000065526 |
| Gene Name: | SPEN |
| Gene Alias: | HIAA0929|MINT|RBM15C|SHARP |
| Gene Description: | spen family transcriptional repressor |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
