Difference between revisions of "TSS:Hg 10616.1"
From referenceTSS
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| Line 2: | Line 2: | ||
|P5CD= | |P5CD= | ||
|P5CDh= | |P5CDh= | ||
| − | |all_trans= | + | |all_trans=HGNC:406 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 11: | Line 11: | ||
|entrez_id=8659 | |entrez_id=8659 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=ALDH4 | + | |gene_alias=ALDH4{{!}}P5CD{{!}}P5CDh |
|gene_description=aldehyde dehydrogenase 4 family member A1 | |gene_description=aldehyde dehydrogenase 4 family member A1 | ||
|gene_id=8659 | |gene_id=8659 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:406 | |hgnc_mgi_id=HGNC:406 | ||
|nearest_ensembl=ENSG00000159423 | |nearest_ensembl=ENSG00000159423 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001319218 |
|nearest_refseq=NM_003748 | |nearest_refseq=NM_003748 | ||
|nearest_unigene=Hs.77448 | |nearest_unigene=Hs.77448 | ||
| − | |num_trans= | + | |num_trans=8659 |
|species=human | |species=human | ||
|start=18902732 | |start=18902732 | ||
|start_of_center_position=18902737 | |start_of_center_position=18902737 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000432718 | + | |transcript_name=ENST00000432718.1 AK289972 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10616.1 | |tss_id=hg_10616.1 | ||
Latest revision as of 19:47, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 18902737 |
|---|---|
| End of the center position in the TSS region: | 18902738 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000432718.1 AK289972 |
|---|---|
| Distance: | 9 |
| Num_trans: | 8659 |
| All_trans: | HGNC:406 |
TATA-Box annotation
| Distance to TSS: | 61 |
|---|---|
| Nearest PromoterID: | NM_001319218 |
| Entrez ID: | 8659 |
| Nearest Unigene: | Hs.77448 |
| Nearest Refseq: | NM_003748 |
| Nearest Ensembl: | ENSG00000159423 |
| Gene Name: | aldehyde dehydrogenase 4 family member A1 |
| Gene Alias: | ALDH4|P5CD|P5CDh |
| Gene Description: | aldehyde dehydrogenase 4 family member A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
