Difference between revisions of "TSS:Mm 6396.1"
From referenceTSS
| Line 3: | Line 3: | ||
|IGFBP-5= | |IGFBP-5= | ||
|IGFBP-5P= | |IGFBP-5P= | ||
| − | |all_trans=BC003951:-347 BC018579:437 AK160514:439 | + | |all_trans=LF216471:13 MA452048:13 LF216472:-235 MA452049:-235 LF216470:250 MA452047:250 BC003951:-347 BC018579:437 AK160514:439 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=13 |
|distance_to_tss=14563 | |distance_to_tss=14563 | ||
|end=72860309 | |end=72860309 | ||
| Line 12: | Line 12: | ||
|entrez_id=16011 | |entrez_id=16011 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=AI256729 | + | |gene_alias=AI256729{{!}}AW208790{{!}}IGFBP-5{{!}}IGFBP-5P |
|gene_description=insulin-like growth factor binding protein 5 | |gene_description=insulin-like growth factor binding protein 5 | ||
|gene_id=16011 | |gene_id=16011 | ||
| − | |gene_name= | + | |gene_name=Igfbp5 |
|gene_source=MGI:96440 | |gene_source=MGI:96440 | ||
|gene_symbol=Igfbp5 | |gene_symbol=Igfbp5 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_010518 | |nearest_refseq=NM_010518 | ||
|nearest_unigene=Mm.405761 | |nearest_unigene=Mm.405761 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=72860295 | |start=72860295 | ||
|start_of_center_position=72860302 | |start_of_center_position=72860302 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF216471 MA452048 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_6396.1 | |tss_id=mm_6396.1 | ||
Latest revision as of 14:28, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72860302 |
|---|---|
| End of the center position in the TSS region: | 72860303 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF216471 MA452048 |
|---|---|
| Distance: | 13 |
| Num_trans: | 9 |
| All_trans: | LF216471:13 MA452048:13 LF216472:-235 MA452049:-235 LF216470:250 MA452047:250 BC003951:-347 BC018579:437 AK160514:439 |
TATA-Box annotation
| Distance to TSS: | 14563 |
|---|---|
| Nearest PromoterID: | NM_010518 |
| Entrez ID: | 16011 |
| Nearest Unigene: | Mm.405761 |
| Nearest Refseq: | NM_010518 |
| Nearest Ensembl: | ENSMUSG00000026185 |
| Gene Name: | Igfbp5 |
| Gene Alias: | AI256729|AW208790|IGFBP-5|IGFBP-5P |
| Gene Description: | insulin-like growth factor binding protein 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
