Difference between revisions of "TSS:Hg 1589.1"
From referenceTSS
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| Line 2: | Line 2: | ||
|SH3BP-1= | |SH3BP-1= | ||
|TIP-B1= | |TIP-B1= | ||
| + | |all_trans=LF356978:81 MA592555:81 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=81 |
| − | |distance_to_tss= | + | |distance_to_tss=1018 |
|end=26281110 | |end=26281110 | ||
|end_of_center_position=26281105 | |end_of_center_position=26281105 | ||
|entrez_id=83442 | |entrez_id=83442 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=HEL-S-297 | + | |gene_alias=HEL-S-297{{!}}SH3BP-1{{!}}TIP-B1 |
|gene_description=SH3 domain binding glutamate rich protein like 3 | |gene_description=SH3 domain binding glutamate rich protein like 3 | ||
|gene_name=SH3BGRL3 | |gene_name=SH3BGRL3 | ||
| Line 18: | Line 19: | ||
|nearest_refseq=NM_031286 | |nearest_refseq=NM_031286 | ||
|nearest_unigene=Hs.109051 | |nearest_unigene=Hs.109051 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=26281098 | |start=26281098 | ||
|start_of_center_position=26281104 | |start_of_center_position=26281104 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF356978 MA592555 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_1589.1 | |tss_id=hg_1589.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 13:36, 13 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 26281104 |
|---|---|
| End of the center position in the TSS region: | 26281105 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF356978 MA592555 |
|---|---|
| Distance: | 81 |
| Num_trans: | 2 |
| All_trans: | LF356978:81 MA592555:81 |
TATA-Box annotation
| Distance to TSS: | 1018 |
|---|---|
| Nearest PromoterID: | NM_031286 |
| Entrez ID: | 83442 |
| Nearest Unigene: | Hs.109051 |
| Nearest Refseq: | NM_031286 |
| Nearest Ensembl: | ENSG00000142669 |
| Gene Name: | SH3BGRL3 |
| Gene Alias: | HEL-S-297|SH3BP-1|TIP-B1 |
| Gene Description: | SH3 domain binding glutamate rich protein like 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
