Difference between revisions of "TSS:Hg 106180.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=121746 |entrez_id=101926942 |gc_percent=0.378109 |gene_alias=- |gene_description=uncharacterized LOC101926942 |gene_name=LOC101...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=NA | ||
|distance_to_tss=121746 | |distance_to_tss=121746 | ||
| + | |end=90419070 | ||
| + | |end_of_center_position=90419060 | ||
|entrez_id=101926942 | |entrez_id=101926942 | ||
|gc_percent=0.378109 | |gc_percent=0.378109 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2653 |
| − | |gene_name= | + | |gene_name=LINC02653 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|nearest_ensembl=ENSG00000236373 | |nearest_ensembl=ENSG00000236373 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NR_110657 | |nearest_refseq=NR_110657 | ||
|nearest_unigene=Hs.382666 | |nearest_unigene=Hs.382666 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=90419048 | ||
| + | |start_of_center_position=90419059 | ||
| + | |strand=+ | ||
| + | |tata_box=-86(CTTTTTATAAAC,+,0.00),-53(GTGTTTATAAAG,-,0.00),-51(GTTTATAAAGTG,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_106180.1 | |tss_id=hg_106180.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:31, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 90419059 |
|---|---|
| End of the center position in the TSS region: | 90419060 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 121746 |
|---|---|
| Nearest PromoterID: | NR_110657 |
| Entrez ID: | 101926942 |
| Nearest Unigene: | Hs.382666 |
| Nearest Refseq: | NR_110657 |
| Nearest Ensembl: | ENSG00000236373 |
| Gene Name: | LINC02653 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2653 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.378109 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -86(CTTTTTATAAAC,+,0.00),-53(GTGTTTATAAAG,-,0.00),-51(GTTTATAAAGTG,+,0.00) |
