Difference between revisions of "TSS:Hg 242696.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |chr= | + | |all_trans=HGNC:41910 |
| + | |chr=chr8 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=-78 |
| − | |distance_to_tss= | + | |distance_to_tss=50 |
| − | |end= | + | |end=143708031 |
|end_of_center_position=143708031 | |end_of_center_position=143708031 | ||
|entrez_id=23386 | |entrez_id=23386 | ||
| Line 10: | Line 11: | ||
|gene_alias=NudCL | |gene_alias=NudCL | ||
|gene_description=NudC domain containing 3 | |gene_description=NudC domain containing 3 | ||
| − | |gene_name= | + | |gene_id=100130274 |
| + | |gene_name=coiled-coil domain containing 166 | ||
| + | |gene_source=HGNC:41910 | ||
| + | |gene_symbol=CCDC166 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:41910 | ||
|nearest_ensembl=ENSG00000015676 | |nearest_ensembl=ENSG00000015676 | ||
|nearest_promoter_id=NM_015332 | |nearest_promoter_id=NM_015332 | ||
|nearest_refseq=NM_015332 | |nearest_refseq=NM_015332 | ||
|nearest_unigene=Hs.488171 | |nearest_unigene=Hs.488171 | ||
| − | |num_trans= | + | |num_trans=100130274 |
|species=human | |species=human | ||
| − | |start= | + | |start=143708030 |
|start_of_center_position=143708030 | |start_of_center_position=143708030 | ||
| − | |strand= | + | |strand=- |
| − | |transcript_name= | + | |transcript_name=ENST00000542437.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_242696.1 | |tss_id=hg_242696.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=P0CW27 | ||
}} | }} | ||
Latest revision as of 14:53, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 143708030 |
|---|---|
| End of the center position in the TSS region: | 143708031 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000542437.1 |
|---|---|
| Distance: | -78 |
| Num_trans: | 100130274 |
| All_trans: | HGNC:41910 |
TATA-Box annotation
| Distance to TSS: | 50 |
|---|---|
| Nearest PromoterID: | NM_015332 |
| Entrez ID: | 23386 |
| Nearest Unigene: | Hs.488171 |
| Nearest Refseq: | NM_015332 |
| Nearest Ensembl: | ENSG00000015676 |
| Gene Name: | coiled-coil domain containing 166 |
| Gene Alias: | NudCL |
| Gene Description: | NudC domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
