Difference between revisions of "TSS:Hg 100001.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|HMGIC/NFIB= | |HMGIC/NFIB= | ||
| + | |MACID= | ||
|NF-I/B= | |NF-I/B= | ||
|NF1-B= | |NF1-B= | ||
| Line 7: | Line 8: | ||
|NFIB2= | |NFIB2= | ||
|NFIB3= | |NFIB3= | ||
| − | |all_trans=ENST00000397581.6 | + | |all_trans=LF355360:-14 MA590937:-14 ENST00000397581.6:-31 ENST00000397579.6:-94 LF355361:-200 MA590938:-200 ENST00000380953.6:337 NM_001369461:337 NM_001369471:337 NM_001369464:337 NM_001369475:337 NM_001369477:337 NM_001190737:337 NM_001369481:337 ENST00000397575.7:409 NM_005596:432 BX648845:432 NR_161382:-466 ENST00000380959.7:493 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance=- | + | |distance=-14 |
| − | |distance_to_tss=- | + | |distance_to_tss=-342 |
|end=14314488 | |end=14314488 | ||
|end_of_center_position=14314483 | |end_of_center_position=14314483 | ||
|entrez_id=4781 | |entrez_id=4781 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=CTF | + | |gene_alias=CTF{{!}}HMGIC/NFIB{{!}}MACID{{!}}NF-I/B{{!}}NF1-B{{!}}NFI-B{{!}}NFI-RED{{!}}NFIB2{{!}}NFIB3 |
|gene_description=nuclear factor I B | |gene_description=nuclear factor I B | ||
|gene_id=4781 | |gene_id=4781 | ||
| − | |gene_name= | + | |gene_name=NFIB |
|gene_source=HGNC:7785 | |gene_source=HGNC:7785 | ||
|gene_symbol=NFIB | |gene_symbol=NFIB | ||
| Line 29: | Line 30: | ||
|nearest_refseq=NM_005596 | |nearest_refseq=NM_005596 | ||
|nearest_unigene=Hs.644095 | |nearest_unigene=Hs.644095 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=14314477 | |start=14314477 | ||
|start_of_center_position=14314482 | |start_of_center_position=14314482 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF355360 MA590937 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100001.1 | |tss_id=hg_100001.1 | ||
Latest revision as of 16:08, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14314482 |
|---|---|
| End of the center position in the TSS region: | 14314483 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF355360 MA590937 |
|---|---|
| Distance: | -14 |
| Num_trans: | 19 |
| All_trans: | LF355360:-14 MA590937:-14 ENST00000397581.6:-31 ENST00000397579.6:-94 LF355361:-200 MA590938:-200 ENST00000380953.6:337 NM_001369461:337 NM_001369471:337 NM_001369464:337 NM_001369475:337 NM_001369477:337 NM_001190737:337 NM_001369481:337 ENST00000397575.7:409 NM_005596:432 BX648845:432 NR_161382:-466 ENST00000380959.7:493 |
TATA-Box annotation
| Distance to TSS: | -342 |
|---|---|
| Nearest PromoterID: | NM_001190737 |
| Entrez ID: | 4781 |
| Nearest Unigene: | Hs.644095 |
| Nearest Refseq: | NM_005596 |
| Nearest Ensembl: | ENSG00000147862 |
| Gene Name: | NFIB |
| Gene Alias: | CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 |
| Gene Description: | nuclear factor I B |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
