Difference between revisions of "TSS:Hg 100019.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|HMGIC/NFIB= | |HMGIC/NFIB= | ||
| + | |MACID= | ||
|NF-I/B= | |NF-I/B= | ||
|NF1-B= | |NF1-B= | ||
| Line 7: | Line 8: | ||
|NFIB2= | |NFIB2= | ||
|NFIB3= | |NFIB3= | ||
| + | |all_trans=LF206504:-348 MA442081:-348 LF355366:485 MA590943:485 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-348 |
| − | |distance_to_tss= | + | |distance_to_tss=11621 |
|end=14520462 | |end=14520462 | ||
|end_of_center_position=14520456 | |end_of_center_position=14520456 | ||
|entrez_id=4781 | |entrez_id=4781 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| − | |gene_alias=CTF | + | |gene_alias=CTF{{!}}HMGIC/NFIB{{!}}MACID{{!}}NF-I/B{{!}}NF1-B{{!}}NFI-B{{!}}NFI-RED{{!}}NFIB2{{!}}NFIB3 |
|gene_description=nuclear factor I B | |gene_description=nuclear factor I B | ||
|gene_name=NFIB | |gene_name=NFIB | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000147862 | |nearest_ensembl=ENSG00000147862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001369458 |
|nearest_refseq=NM_005596 | |nearest_refseq=NM_005596 | ||
|nearest_unigene=Hs.644095 | |nearest_unigene=Hs.644095 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=14520449 | |start=14520449 | ||
|start_of_center_position=14520455 | |start_of_center_position=14520455 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF206504 MA442081 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100019.1 | |tss_id=hg_100019.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:08, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 14520455 |
|---|---|
| End of the center position in the TSS region: | 14520456 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF206504 MA442081 |
|---|---|
| Distance: | -348 |
| Num_trans: | 4 |
| All_trans: | LF206504:-348 MA442081:-348 LF355366:485 MA590943:485 |
TATA-Box annotation
| Distance to TSS: | 11621 |
|---|---|
| Nearest PromoterID: | NM_001369458 |
| Entrez ID: | 4781 |
| Nearest Unigene: | Hs.644095 |
| Nearest Refseq: | NM_005596 |
| Nearest Ensembl: | ENSG00000147862 |
| Gene Name: | NFIB |
| Gene Alias: | CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 |
| Gene Description: | nuclear factor I B |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
