Difference between revisions of "TSS:Hg 143377.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000554558.5:0 ENST00000412224.6:0 ENST00000535211.1:0 NR_027123:0 uc059btj.1:0 uc001xbz.3:0 uc059btl.1:0 AK124927:0 JX046911:0 JX628584:0 ENST0000...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |MYCLo-3= |
| + | |all_trans=HGNC:19842 | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-7 | |distance_to_tss=-7 | ||
|end=55580121 | |end=55580121 | ||
| + | |end_of_center_position=55580099 | ||
|entrez_id=100129075 | |entrez_id=100129075 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=C14orf33 | + | |gene_alias=C14orf33{{!}}MYCLo-3 |
|gene_description=KTN1 antisense RNA 1 | |gene_description=KTN1 antisense RNA 1 | ||
|gene_id=100129075 | |gene_id=100129075 | ||
| Line 14: | Line 16: | ||
|gene_source=HGNC:19842 | |gene_source=HGNC:19842 | ||
|gene_symbol=KTN1-AS1 | |gene_symbol=KTN1-AS1 | ||
| − | |gene_synonyms= | + | |gene_synonyms=MYCLo-3 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:19842 | |hgnc_mgi_id=HGNC:19842 | ||
| Line 21: | Line 23: | ||
|nearest_refseq=NR_027123 | |nearest_refseq=NR_027123 | ||
|nearest_unigene=Hs.633724 | |nearest_unigene=Hs.633724 | ||
| − | |num_trans= | + | |num_trans=100129075 |
|species=human | |species=human | ||
|start=55580076 | |start=55580076 | ||
| + | |start_of_center_position=55580098 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-46(GCCCCTTAAAGG,-,0.00),-45(CCCCTTAAAGGG,+,0.00),-45(CCCCTTAAAGGG,-,0.00),-44(CCCTTAAAGGGA,+,0.00),-43(CCTTAAAGGGAC,+,0.00) |
| − | |transcript_name=ENST00000554558. | + | |transcript_name=ENST00000554558.6 ENST00000663990.1 ENST00000412224.6 ENST00000535211.1 AK124927 JX046911 JX628584 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_143377.1 | |tss_id=hg_143377.1 | ||
Latest revision as of 09:17, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 55580098 |
|---|---|
| End of the center position in the TSS region: | 55580099 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000554558.6 ENST00000663990.1 ENST00000412224.6 ENST00000535211.1 AK124927 JX046911 JX628584 |
|---|---|
| Distance: | 0 |
| Num_trans: | 100129075 |
| All_trans: | HGNC:19842 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NR_027123 |
| Entrez ID: | 100129075 |
| Nearest Unigene: | Hs.633724 |
| Nearest Refseq: | NR_027123 |
| Nearest Ensembl: | ENSG00000186615 |
| Gene Name: | KTN1 antisense RNA 1 |
| Gene Alias: | C14orf33|MYCLo-3 |
| Gene Description: | KTN1 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.15 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -46(GCCCCTTAAAGG,-,0.00),-45(CCCCTTAAAGGG,+,0.00),-45(CCCCTTAAAGGG,-,0.00),-44(CCCTTAAAGGGA,+,0.00),-43(CCTTAAAGGGAC,+,0.00) |
