Difference between revisions of "TSS:Hg 100302.1"
From referenceTSS
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|HELN1= | |HELN1= | ||
|HUB= | |HUB= | ||
| + | |all_trans=NM_001351466:-22 NM_001351460:-22 NM_001351456:-22 NM_001351462:-22 NM_001385694:-22 NM_001385695:-22 NM_001385696:-22 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=-22 |
| − | |distance_to_tss= | + | |distance_to_tss=28 |
|end=23850579 | |end=23850579 | ||
|end_of_center_position=23850573 | |end_of_center_position=23850573 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=HEL-N1 | + | |gene_alias=HEL-N1{{!}}HELN1{{!}}HUB |
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
| − | |gene_name=ELAVL2 | + | |gene_id=1993 |
| + | |gene_name=ELAV like RNA binding protein 2 | ||
| + | |gene_source=HGNC:3313 | ||
| + | |gene_symbol=ELAVL2 | ||
| + | |gene_synonyms=HEL-N1 HuB | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3313 | ||
|nearest_ensembl=ENSG00000107105 | |nearest_ensembl=ENSG00000107105 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351456 |
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=23850566 | |start=23850566 | ||
|start_of_center_position=23850572 | |start_of_center_position=23850572 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001351456.2 NM_001385695.1 NM_001351460.2 NM_001351462.2 NM_001385696.1 NM_001351466.2 NM_001385694.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100302.1 | |tss_id=hg_100302.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 17:40, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 23850572 |
|---|---|
| End of the center position in the TSS region: | 23850573 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001351456.2 NM_001385695.1 NM_001351460.2 NM_001351462.2 NM_001385696.1 NM_001351466.2 NM_001385694.1 |
|---|---|
| Distance: | -22 |
| Num_trans: | 7 |
| All_trans: | NM_001351466:-22 NM_001351460:-22 NM_001351456:-22 NM_001351462:-22 NM_001385694:-22 NM_001385695:-22 NM_001385696:-22 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001351456 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAV like RNA binding protein 2 |
| Gene Alias: | HEL-N1|HELN1|HUB |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
