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Difference between revisions of "TSS:Hg 100512.1"

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{{TSSDetail
 
{{TSSDetail
−
|all_trans=ENST00000379089.5:-58 ENST00000379087.5:-58 ENST00000379084.5:-58 ENST00000379081.5:-58 ENST00000379080.5:-58 ENST00000422409.5:-58 ENST00000379078.1:-58 uc064srz.1:-58 uc064ssa.1:-58 uc064ssb.1:-58 uc064ssc.1:-58 uc064ssd.1:-58 uc064sse.1:-58 uc064ssf.1:-58 AK299882:-71 ENST00000445726.5:-76 ENST00000297620.8:-76 NM_001184945:-76 NM_001184943:-76 NM_147202:-76 NM_001184942:-76 NM_001184941:-76 NM_001184940:-76 uc011lok.3:-76 uc003zuj.4:-76 AK123887:-76 BC041009:-76 AK096350:-76 AK294054:-76 KJ895817:213
+
|all_trans=HGNC:19920
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.095
 
|cpg_percent=0.095
Line 19: Line 19:
 
|hgnc_mgi_id=HGNC:19920
 
|hgnc_mgi_id=HGNC:19920
 
|nearest_ensembl=ENSG00000164970
 
|nearest_ensembl=ENSG00000164970
−
|nearest_promoter_id=NM_147202
+
|nearest_promoter_id=NM_001184943
 
|nearest_refseq=NM_147202
 
|nearest_refseq=NM_147202
 
|nearest_unigene=Hs.493771
 
|nearest_unigene=Hs.493771
−
|num_trans=30
+
|num_trans=203259
 
|species=human
 
|species=human
 
|start=34458476
 
|start=34458476
 
|start_of_center_position=34458485
 
|start_of_center_position=34458485
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000379089.5 ENST00000379087.5 ENST00000379084.5 ENST00000379081.5 ENST00000379080.5 ENST00000422409.5 ENST00000379078.1 uc064srz.1 uc064ssa.1 uc064ssb.1 uc064ssc.1 uc064ssd.1 uc064sse.1 uc064ssf.1
+
|transcript_name=ENST00000379089.5 ENST00000379087.5 ENST00000379084.5 ENST00000379081.5 ENST00000379080.5 ENST00000422409.5 ENST00000379078.1
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_100512.1
 
|tss_id=hg_100512.1

Latest revision as of 17:45, 19 July 2021

Basic information about the TSS

TSS ID:hg_100512.1
Species:human
Chr:chr9
TSS Classification:yes
Start:34458476
End:34458494
Strand:-
TSS Score:1
Start of the center position in the TSS region:34458485
End of the center position in the TSS region:34458486



Gene and protein annotation

Transcript_name:ENST00000379089.5 ENST00000379087.5 ENST00000379084.5 ENST00000379081.5 ENST00000379080.5 ENST00000422409.5 ENST00000379078.1
Distance:-58
GeneID:203259
HGNC/MGI_ID:HGNC:19920
UniProt_ID:A0A0A0MRV9 A0A0A0MRW0 A0A0A0MRW1 A0A0A0MRW2 A0A0A0MRW3 Q5T586 Q5T593
Gene_name:family with sequence similarity 219 member A
Gene_symbol:FAM219A
Gene_synonyms:FLJ39031 bA573M23.5
Gene_source:HGNC:19920



Transcript annotation

Transcript_name:ENST00000379089.5 ENST00000379087.5 ENST00000379084.5 ENST00000379081.5 ENST00000379080.5 ENST00000422409.5 ENST00000379078.1
Distance:-58
Num_trans:203259
All_trans:HGNC:19920



TATA-Box annotation

Distance to TSS:85
Nearest PromoterID:NM_001184943
Entrez ID:203259
Nearest Unigene:Hs.493771
Nearest Refseq:NM_147202
Nearest Ensembl:ENSG00000164970
Gene Name:family with sequence similarity 219 member A
Gene Alias:C9orf25
Gene Description:family with sequence similarity 219 member A
Gene Type:protein-coding
CpG%:0.095
GC%:0.721393
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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