Difference between revisions of "TSS:Hg 100721.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|BSAP= | |BSAP= | ||
| − | |all_trans= | + | |all_trans=HGNC:8619 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance= | + | |distance=205 |
| − | |distance_to_tss= | + | |distance_to_tss=-207 |
|end=37034477 | |end=37034477 | ||
|end_of_center_position=37034475 | |end_of_center_position=37034475 | ||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=ALL3 | + | |gene_alias=ALL3{{!}}BSAP |
|gene_description=paired box 5 | |gene_description=paired box 5 | ||
|gene_id=5079 | |gene_id=5079 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:8619 | |hgnc_mgi_id=HGNC:8619 | ||
|nearest_ensembl=ENSG00000196092 | |nearest_ensembl=ENSG00000196092 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001280553 |
|nearest_refseq=NM_016734 | |nearest_refseq=NM_016734 | ||
|nearest_unigene=Hs.654464 | |nearest_unigene=Hs.654464 | ||
| − | |num_trans= | + | |num_trans=5079 |
|species=human | |species=human | ||
|start=37034472 | |start=37034472 | ||
|start_of_center_position=37034474 | |start_of_center_position=37034474 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(CCCTATAAAAGT,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100721.1 | |tss_id=hg_100721.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=E7ES87 Q02548 | + | |uniprot_id=E7EQT0 E7ES87 Q02548 |
}} | }} | ||
Latest revision as of 17:49, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 37034474 |
|---|---|
| End of the center position in the TSS region: | 37034475 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 |
|---|---|
| Distance: | 205 |
| Num_trans: | 5079 |
| All_trans: | HGNC:8619 |
TATA-Box annotation
| Distance to TSS: | -207 |
|---|---|
| Nearest PromoterID: | NM_001280553 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | paired box 5 |
| Gene Alias: | ALL3|BSAP |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CCCTATAAAAGT,-,0.00) |
