Difference between revisions of "TSS:Hg 100782.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|TCONS_00015562= | |TCONS_00015562= | ||
| − | |all_trans= | + | |all_trans=HGNC:48823 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-17 |
|distance_to_tss=125 | |distance_to_tss=125 | ||
|end=39810037 | |end=39810037 | ||
| Line 10: | Line 10: | ||
|entrez_id=389741 | |entrez_id=389741 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| − | |gene_alias=LINC01172 | + | |gene_alias=LINC01172{{!}}TCONS_00015562 |
|gene_description=glioblastoma down-regulated RNA | |gene_description=glioblastoma down-regulated RNA | ||
|gene_id=389741 | |gene_id=389741 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:48823 | |hgnc_mgi_id=HGNC:48823 | ||
|nearest_ensembl=ENSG00000278175 | |nearest_ensembl=ENSG00000278175 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_015363 |
|nearest_refseq=NM_203448 | |nearest_refseq=NM_203448 | ||
|nearest_unigene=Hs.380240 | |nearest_unigene=Hs.380240 | ||
| − | |num_trans= | + | |num_trans=389741 |
|species=human | |species=human | ||
|start=39810030 | |start=39810030 | ||
|start_of_center_position=39810033 | |start_of_center_position=39810033 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000640674.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100782.1 | |tss_id=hg_100782.1 | ||
Latest revision as of 17:51, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 39810033 |
|---|---|
| End of the center position in the TSS region: | 39810034 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000640674.1 |
|---|---|
| Distance: | -17 |
| Num_trans: | 389741 |
| All_trans: | HGNC:48823 |
TATA-Box annotation
| Distance to TSS: | 125 |
|---|---|
| Nearest PromoterID: | NR_015363 |
| Entrez ID: | 389741 |
| Nearest Unigene: | Hs.380240 |
| Nearest Refseq: | NM_203448 |
| Nearest Ensembl: | ENSG00000278175 |
| Gene Name: | glioblastoma down-regulated RNA |
| Gene Alias: | LINC01172|TCONS_00015562 |
| Gene Description: | glioblastoma down-regulated RNA |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
