Difference between revisions of "TSS:Mm 9975.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:109384 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=-80 | |distance=-80 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-6508 |
|end=191217959 | |end=191217959 | ||
|end_of_center_position=191217946 | |end_of_center_position=191217946 | ||
| − | |entrez_id= | + | |entrez_id=100504360 |
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias= | + | |gene_alias=AU020850 |
| − | |gene_description= | + | |gene_description=RIKEN cDNA D730003I15 gene |
|gene_id=11910 | |gene_id=11910 | ||
|gene_name=activating transcription factor 3 | |gene_name=activating transcription factor 3 | ||
| Line 16: | Line 16: | ||
|gene_symbol=Atf3 | |gene_symbol=Atf3 | ||
|gene_synonyms=LRG-21 | |gene_synonyms=LRG-21 | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=MGI:109384 | |hgnc_mgi_id=MGI:109384 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_151547 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_001033188 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.16927 |
| − | |num_trans= | + | |num_trans=11910 |
|species=mouse | |species=mouse | ||
|start=191217932 | |start=191217932 | ||
|start_of_center_position=191217945 | |start_of_center_position=191217945 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000195117 | + | |transcript_name=ENSMUST00000195117.1 AB291912 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_9975.1 | |tss_id=mm_9975.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q4FJW1 | + | |uniprot_id=Q4FJW1 |
}} | }} | ||
Latest revision as of 19:33, 28 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 191217945 |
|---|---|
| End of the center position in the TSS region: | 191217946 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000195117.1 AB291912 |
|---|---|
| Distance: | -80 |
| Num_trans: | 11910 |
| All_trans: | MGI:109384 |
TATA-Box annotation
| Distance to TSS: | -6508 |
|---|---|
| Nearest PromoterID: | NR_151547 |
| Entrez ID: | 100504360 |
| Nearest Unigene: | Mm.16927 |
| Nearest Refseq: | NM_001033188 |
| Nearest Ensembl: | |
| Gene Name: | activating transcription factor 3 |
| Gene Alias: | AU020850 |
| Gene Description: | RIKEN cDNA D730003I15 gene |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
