Difference between revisions of "TSS:Hg 100907.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000354500.6 | + | |LTRPC3= |
| + | |MLSN2= | ||
| + | |all_trans=NM_001366143:0 NM_001366142:0 NM_001366141:0 NM_001366144:0 ENST00000354500.6:34 AL136545:34 ENST00000357533.6:103 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=14 |
|end=71446977 | |end=71446977 | ||
|end_of_center_position=71446958 | |end_of_center_position=71446958 | ||
| − | |entrez_id= | + | |entrez_id=80036 |
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=- | + | |gene_alias=GON-2{{!}}LTRPC3{{!}}MLSN2 |
| − | |gene_description= | + | |gene_description=transient receptor potential cation channel subfamily M member 3 |
|gene_id=80036 | |gene_id=80036 | ||
|gene_name=transient receptor potential cation channel subfamily M member 3 | |gene_name=transient receptor potential cation channel subfamily M member 3 | ||
| Line 18: | Line 20: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:17992 | |hgnc_mgi_id=HGNC:17992 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000083067 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001366141 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_020952 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.47288 |
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=71446937 | |start=71446937 | ||
|start_of_center_position=71446957 | |start_of_center_position=71446957 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001366142.2 NM_001366141.2 NM_001366143.2 NM_001366144.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100907.1 | |tss_id=hg_100907.1 | ||
Latest revision as of 17:53, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 71446957 |
|---|---|
| End of the center position in the TSS region: | 71446958 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001366142.2 NM_001366141.2 NM_001366143.2 NM_001366144.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | NM_001366143:0 NM_001366142:0 NM_001366141:0 NM_001366144:0 ENST00000354500.6:34 AL136545:34 ENST00000357533.6:103 |
TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NM_001366141 |
| Entrez ID: | 80036 |
| Nearest Unigene: | Hs.47288 |
| Nearest Refseq: | NM_020952 |
| Nearest Ensembl: | ENSG00000083067 |
| Gene Name: | transient receptor potential cation channel subfamily M member 3 |
| Gene Alias: | GON-2|LTRPC3|MLSN2 |
| Gene Description: | transient receptor potential cation channel subfamily M member 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
