Difference between revisions of "TSS:Hg 100952.1"
From referenceTSS
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| Line 2: | Line 2: | ||
|ZFAND5A= | |ZFAND5A= | ||
|ZNF216= | |ZNF216= | ||
| − | |all_trans= | + | |all_trans=LF211276:14 MA446853:14 ENST00000376960.8:431 ENST00000376962.10:458 NM_006007:458 NM_001102421:458 NM_001102420:458 BC027707:469 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=14 |
| − | |distance_to_tss=- | + | |distance_to_tss=-459 |
|end=72365669 | |end=72365669 | ||
|end_of_center_position=72365668 | |end_of_center_position=72365668 | ||
|entrez_id=7763 | |entrez_id=7763 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=ZA20D2 | + | |gene_alias=ZA20D2{{!}}ZFAND5A{{!}}ZNF216 |
|gene_description=zinc finger AN1-type containing 5 | |gene_description=zinc finger AN1-type containing 5 | ||
|gene_id=7763 | |gene_id=7763 | ||
| − | |gene_name= | + | |gene_name=ZFAND5 |
|gene_source=HGNC:13008 | |gene_source=HGNC:13008 | ||
|gene_symbol=ZFAND5 | |gene_symbol=ZFAND5 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:13008 | |hgnc_mgi_id=HGNC:13008 | ||
|nearest_ensembl=ENSG00000107372 | |nearest_ensembl=ENSG00000107372 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001102421 |
|nearest_refseq=NM_006007 | |nearest_refseq=NM_006007 | ||
|nearest_unigene=Hs.406096 | |nearest_unigene=Hs.406096 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=72365667 | |start_of_center_position=72365667 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=39(CCTTTTCTGGGG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF211276 MA446853 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_100952.1 | |tss_id=hg_100952.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=O76080 | |uniprot_id=O76080 | ||
}} | }} | ||
Latest revision as of 17:54, 12 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 72365667 |
|---|---|
| End of the center position in the TSS region: | 72365668 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF211276 MA446853 |
|---|---|
| Distance: | 14 |
| Num_trans: | 8 |
| All_trans: | LF211276:14 MA446853:14 ENST00000376960.8:431 ENST00000376962.10:458 NM_006007:458 NM_001102421:458 NM_001102420:458 BC027707:469 |
TATA-Box annotation
| Distance to TSS: | -459 |
|---|---|
| Nearest PromoterID: | NM_001102421 |
| Entrez ID: | 7763 |
| Nearest Unigene: | Hs.406096 |
| Nearest Refseq: | NM_006007 |
| Nearest Ensembl: | ENSG00000107372 |
| Gene Name: | ZFAND5 |
| Gene Alias: | ZA20D2|ZFAND5A|ZNF216 |
| Gene Description: | zinc finger AN1-type containing 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 39(CCTTTTCTGGGG,+,0.00) |
