Difference between revisions of "TSS:Hg 101500.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=DQ599685:-9 AK309269:-36 ENST00000483149.6:-139 ENST00000520470 | + | |all_trans=DQ599685:-9 AK309269:-36 ENST00000483149.6:-139 ENST00000520470.5:-139 BC107135:-139 BC107136:-139 BC113074:-139 BC160143:369 DQ579422:398 ENST00000375412.11:-463 NR_136231:-463 NM_198841:-463 AK056096:-474 NR_136229:-483 NR_136230:-483 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=-9 | |distance=-9 | ||
| − | |distance_to_tss= | + | |distance_to_tss=483 |
|end=93453118 | |end=93453118 | ||
|end_of_center_position=93453098 | |end_of_center_position=93453098 | ||
| Line 14: | Line 14: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000188938 | |nearest_ensembl=ENSG00000188938 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_136231 |
|nearest_refseq=NM_198841 | |nearest_refseq=NM_198841 | ||
|nearest_unigene=Hs.350364 | |nearest_unigene=Hs.350364 | ||
Latest revision as of 16:41, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 93453097 |
|---|---|
| End of the center position in the TSS region: | 93453098 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | DQ599685 |
|---|---|
| Distance: | -9 |
| Num_trans: | 15 |
| All_trans: | DQ599685:-9 AK309269:-36 ENST00000483149.6:-139 ENST00000520470.5:-139 BC107135:-139 BC107136:-139 BC113074:-139 BC160143:369 DQ579422:398 ENST00000375412.11:-463 NR_136231:-463 NM_198841:-463 AK056096:-474 NR_136229:-483 NR_136230:-483 |
TATA-Box annotation
| Distance to TSS: | 483 |
|---|---|
| Nearest PromoterID: | NR_136231 |
| Entrez ID: | 158293 |
| Nearest Unigene: | Hs.350364 |
| Nearest Refseq: | NM_198841 |
| Nearest Ensembl: | ENSG00000188938 |
| Gene Name: | FAM120AOS |
| Gene Alias: | C9orf10OS |
| Gene Description: | family with sequence similarity 120A opposite strand |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
