Difference between revisions of "TSS:Hg 102034.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:26535 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=463 |
| − | |distance_to_tss=- | + | |distance_to_tss=-469 |
|end=111783969 | |end=111783969 | ||
|end_of_center_position=111783963 | |end_of_center_position=111783963 | ||
|entrez_id=158401 | |entrez_id=158401 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias= | + | |gene_alias=C9orf84{{!}}ZIP2{{!}}ZIP2H |
| − | |gene_description= | + | |gene_description=shortage in chiasmata 1 |
|gene_id=158401 | |gene_id=158401 | ||
| − | |gene_name= | + | |gene_name=shortage in chiasmata 1 |
|gene_source=HGNC:26535 | |gene_source=HGNC:26535 | ||
| − | |gene_symbol= | + | |gene_symbol=SHOC1 |
| − | |gene_synonyms=FLJ32779 | + | |gene_synonyms=FLJ32779 MZIP2 Zip2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26535 | |hgnc_mgi_id=HGNC:26535 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_173521 | |nearest_refseq=NM_173521 | ||
|nearest_unigene=Hs.428209 | |nearest_unigene=Hs.428209 | ||
| − | |num_trans= | + | |num_trans=158401 |
|species=human | |species=human | ||
|start=111783955 | |start=111783955 | ||
|start_of_center_position=111783962 | |start_of_center_position=111783962 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000318737.8 AL833535 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102034.1 | |tss_id=hg_102034.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5VXU9 |
}} | }} | ||
Latest revision as of 18:18, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 111783962 |
|---|---|
| End of the center position in the TSS region: | 111783963 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000318737.8 AL833535 |
|---|---|
| Distance: | 463 |
| Num_trans: | 158401 |
| All_trans: | HGNC:26535 |
TATA-Box annotation
| Distance to TSS: | -469 |
|---|---|
| Nearest PromoterID: | NM_173521 |
| Entrez ID: | 158401 |
| Nearest Unigene: | Hs.428209 |
| Nearest Refseq: | NM_173521 |
| Nearest Ensembl: | ENSG00000165181 |
| Gene Name: | shortage in chiasmata 1 |
| Gene Alias: | C9orf84|ZIP2|ZIP2H |
| Gene Description: | shortage in chiasmata 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
