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Difference between revisions of "Template:PeakPage"

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table {
 
table {
 
border-collapse:collapse;
 
border-collapse:collapse;
−
width: 400px;
 
 
}
 
}
−
tr{
+
.inner tr{
 
border-bottom-style: dotted;
 
border-bottom-style: dotted;
 
border-bottom-width: thin;
 
border-bottom-width: thin;
 
}
 
}
 +
.section_head{
 +
font-weight: bold;
 +
font-size: 16px;
 +
font-style:;
 +
}
 +
 +
.item_label {
 +
    text-align:left;
 +
    width:60px;
 +
}
 +
.item_label_long {
 +
    text-align:left;
 +
    width:200px;
 +
    word-wrap:break-word;
 +
}
 +
.ttb {
 +
    width:400px;
 +
    word-wrap:break-word;
 +
}
 
</style>
 
</style>
 
</html>
 
</html>
−
<table border="0" >
+
<span class="section_head">Basic information about the TSS</span>
−
<tr><th scope="row" align="left">PeakID:</th><td>[[peak_id::{{{peak_id}}}]]</td></tr>
+
<hr width="370px" size="2" style="text-align:left;margin-left:0" noshade>
−
<tr><th scope="row" align="left">[[Property:species|Species]]:</th><td>[[species::{{{species}}}]]</td></tr>
+
<table width="370px"><tr><td>
−
<tr><th scope="row" align="left">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr>
+
<div style="width:42%; float:left;">
−
<tr><th scope="row" align="left">Start:</th><td>[[start::{{{start}}}]]</td></tr>
+
<table class="inner" >
−
<tr><th scope="row" align="left">End:</th><td>[[end::{{{end}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">TSS ID:</th><td>{{{tss_id}}}</td></tr>
−
<tr><th scope="row" align="left">Strand:</th><td>[[strand::{{{strand}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Species:</th><td>{{{species}}}</td></tr>
−
<tr><th scope="row" align="left">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Chr:</th><td>{{{chr}}}</td></tr>
−
<tr><th scope="row" align="left">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">TSS Classification:</th><td>{{{tss_classification}}}</td></tr>
−
<tr><th scope="row" align="left">Nearest PromoterID:</th><td>[[nearest_promoter_id::{{{nearest_promoter_id}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Entrez ID:</th><td>[[entrez_id::{{{entrez_id}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Nearest Unigene:</th><td>[[nearest_unigene::{{{nearest_unigene}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Nearest Refseq:</th><td>[[nearest_refseq::{{{nearest_refseq}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Nearest Ensembl:</th><td>[[nearest_ensembl::{{{nearest_ensembl}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Gene Name:</th><td>[[gene_name::{{{gene_name}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Gene Alias:</th><td>[[gene_alias::{{{gene_alias}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Gene Description:</th><td>[[gene_description::{{{gene_description}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Gene Type:</th><td>[[gene_type::{{{gene_type}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">CpG%:</th><td>[[cpg_percent::{{{cpg_percent}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">GC%:</th><td>[[gc_percent::{{{gc_percent}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td>[[tata_box::{{{tata_box}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Transcript_name:</th><td>[[transcript_name::{{{transcript_name}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Distance:</th><td>[[distance::{{{distance}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Num_trans:</th><td>[[num_trans::{{{num_trans}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">All_trans:</th><td>[[all_trans::{{{all_trans}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">GeneID:</th><td>[[gene_id::{{{gene_id}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>[[hgnc_mgi_id::{{{hgnc_mgi_id}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">UniProt_ID:</th><td>[[uniprot_id::{{{uniprot_id}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Gene_name:</th><td>[[gene_name::{{{gene_name}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Gene_symbol:</th><td>[[gene_symbol::{{{gene_symbol}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Gene_synonyms:</th><td>[[gene_synonyms::{{{gene_synonyms}}}]]</td></tr>
 
−
<tr><th scope="row" align="left">Gene_source:</th><td>[[gene_source::{{{gene_source}}}]]</td></tr>
 
 
</table>
 
</table>
−
<!--
+
</div>
−
{{Fontsize|3|Basic information about the peak}}<br><br>
+
<div style="width:42%; float:right;margin-left:40px">
−
{{Fontsize|3|TATA-Box annotation}}<br><br>
+
<table class="inner" >
−
{{Fontsize|3|Transcript annotation}}<br><br>
+
<tr><th scope="row" class="item_label">Start:</th><td>{{{start}}}</td></tr>
−
{{Fontsize|3|Gene and protein annotation}}<br><br>
+
<tr><th scope="row" class="item_label">End:</th><td>{{{end}}}</td></tr>
−
{{Fontsize|3|TSS classification}}<br><br>
+
<tr><th scope="row" class="item_label">Strand:</th><td>{{{strand}}}</td></tr>
−
-->
+
<tr><th scope="row" class="item_label">TSS Score:</th><td>{{{strand}}}</td></tr>
 +
</table>
 +
</div></td></tr>
 +
</table>
 +
<br/>
 +
<br/>
 +
<span class="section_head">Gene and protein annotation</span>
 +
<hr width="270px" size="2" style="text-align:left;margin-left:0" noshade>
 +
<table border="0" ><tr><td>
 +
<div style="width:42%; float:left;">
 +
<table class="inner" >
 +
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr>
 +
<tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr>
 +
<tr><th scope="row" align="left">GeneID:</th><td>{{{gene_id}}}</td></tr>
 +
<tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{{hgnc_mgi_id}}}</td></tr>
 +
<tr><th scope="row" align="left">UniProt_ID:</th><td>{{{uniprot_id}}}</td></tr>
 +
</table></div>
 +
<div style="width:42%; float:right;">
 +
<table class="inner" >
 +
<tr><th scope="row" align="left">Gene_name:</th><td>{{{gene_name}}}</td></tr>
 +
<tr><th scope="row" align="left">Gene_symbol:</th><td>{{{gene_symbol}}}</td></tr>
 +
<tr><th scope="row" align="left">Gene_synonyms:</th><td>{{{gene_synonyms}}}</td></tr>
 +
<tr><th scope="row" align="left">Gene_source:</th><td>{{{gene_source}}}</td></tr>
 +
</table>
 +
</div></td></tr>
 +
</table>
 +
<br/>
 +
<br/>
 +
<span class="section_head">Transcript annotation</span>
 +
<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade>
 +
<table class="inner" border="0" >
 +
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr>
 +
<tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr>
 +
<tr><th scope="row" align="left">Num_trans:</th><td>{{{num_trans}}}</td></tr>
 +
<tr><th scope="row" align="left">All_trans:</th><td>:{{{all_trans}}}</td></tr>
 +
</table>
 +
<br/>
 +
<br/>
 +
<span class="section_head">TATA-Box annotation</span>
 +
<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade>
 +
<table class="inner" style="width: 600px;table-layout:fixed;">
 +
<tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb">{{{distance_to_tss}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb">{{{nearest_promoter_id}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb">{{{entrez_id}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb">{{{nearest_unigene}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb">{{{nearest_refseq}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb">{{{nearest_ensembl}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">{{{gene_name}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">{{{gene_alias}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">{{{gene_description}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">{{{gene_type}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">{{{cpg_percent}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb">{{{gc_percent}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):</th><td class="ttb">{{{tata_box}}}</td></tr>
 +
</table>
 +
 
 +
{{#set:species={{{species}}}}}

Latest revision as of 10:56, 22 February 2018



Basic information about the TSS

TSS ID:{{{tss_id}}}
Species:{{{species}}}
Chr:{{{chr}}}
TSS Classification:{{{tss_classification}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}
TSS Score:{{{strand}}}



Gene and protein annotation

Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
GeneID:{{{gene_id}}}
HGNC/MGI_ID:{{{hgnc_mgi_id}}}
UniProt_ID:{{{uniprot_id}}}
Gene_name:{{{gene_name}}}
Gene_symbol:{{{gene_symbol}}}
Gene_synonyms:{{{gene_synonyms}}}
Gene_source:{{{gene_source}}}



Transcript annotation

Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
Num_trans:{{{num_trans}}}
All_trans::{{{all_trans}}}



TATA-Box annotation

Distance to TSS:{{{distance_to_tss}}}
Nearest PromoterID:{{{nearest_promoter_id}}}
Entrez ID:{{{entrez_id}}}
Nearest Unigene:{{{nearest_unigene}}}
Nearest Refseq:{{{nearest_refseq}}}
Nearest Ensembl:{{{nearest_ensembl}}}
Gene Name:{{{gene_name}}}
Gene Alias:{{{gene_alias}}}
Gene Description:{{{gene_description}}}
Gene Type:{{{gene_type}}}
CpG%:{{{cpg_percent}}}
GC%:{{{gc_percent}}}
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):{{{tata_box}}}


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