Difference between revisions of "TSS:Hg 243050.1"
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{{TSSDetail | {{TSSDetail | ||
|all_trans=BC000047:-5 ENST00000526668.5:-48 uc064rpw.1:-48 ENST00000531975.5:-146 uc064rpu.1:-146 ENST00000528296.5:-214 uc064rpx.1:-214 BT007379:-218 CR457046:-218 CU674022:-219 DQ893309:-220 EU176553:-220 AB590228:-223 ENST00000529920.5:-232 uc064rqa.1:-232 BC007935:-232 BC030151:-232 ENST00000533397.5:-242 uc064rqb.1:-242 BC012197:-433 ENST00000528957.5:-440 uc064rpz.1:-440 BC013104:-467 BC000077:-470 ENST00000532702.1:-473 uc064rqc.1:-473 ENST00000394920.6:-478 NM_033301:-478 NM_001317782:-478 NM_001317771:-478 uc003zeb.4:-478 ENST00000529163.5:-479 uc064rpv.1:-479 AK301073:-479 D28421:-479 AK289459:-485 | |all_trans=BC000047:-5 ENST00000526668.5:-48 uc064rpw.1:-48 ENST00000531975.5:-146 uc064rpu.1:-146 ENST00000528296.5:-214 uc064rpx.1:-214 BT007379:-218 CR457046:-218 CU674022:-219 DQ893309:-220 EU176553:-220 AB590228:-223 ENST00000529920.5:-232 uc064rqa.1:-232 BC007935:-232 BC030151:-232 ENST00000533397.5:-242 uc064rqb.1:-242 BC012197:-433 ENST00000528957.5:-440 uc064rpz.1:-440 BC013104:-467 BC000077:-470 ENST00000532702.1:-473 uc064rqc.1:-473 ENST00000394920.6:-478 NM_033301:-478 NM_001317782:-478 NM_001317771:-478 uc003zeb.4:-478 ENST00000529163.5:-479 uc064rpv.1:-479 AK301073:-479 D28421:-479 AK289459:-485 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=82 | |distance_to_tss=82 | ||
| − | |end= | + | |end=113291879 |
|end_of_center_position=113291873 | |end_of_center_position=113291873 | ||
|entrez_id=102465978 | |entrez_id=102465978 | ||
| Line 12: | Line 12: | ||
|gene_description=microRNA 6850 | |gene_description=microRNA 6850 | ||
|gene_id=6132 | |gene_id=6132 | ||
| − | |gene_name= | + | |gene_name=MIR6850 |
|gene_source=HGNC:10368 | |gene_source=HGNC:10368 | ||
|gene_symbol=RPL8 | |gene_symbol=RPL8 | ||
| Line 18: | Line 18: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:10368 | |hgnc_mgi_id=HGNC:10368 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000283764 |
|nearest_promoter_id=NR_106909 | |nearest_promoter_id=NR_106909 | ||
|nearest_refseq=NR_106909 | |nearest_refseq=NR_106909 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=113291865 |
|start_of_center_position=113291872 | |start_of_center_position=113291872 | ||
| − | |strand= | + | |strand=+ |
| − | |transcript_name= | + | |transcript_name= |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_243050.1 | |tss_id=hg_243050.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 12:42, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 113291872 |
|---|---|
| End of the center position in the TSS region: | 113291873 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | BC000047:-5 ENST00000526668.5:-48 uc064rpw.1:-48 ENST00000531975.5:-146 uc064rpu.1:-146 ENST00000528296.5:-214 uc064rpx.1:-214 BT007379:-218 CR457046:-218 CU674022:-219 DQ893309:-220 EU176553:-220 AB590228:-223 ENST00000529920.5:-232 uc064rqa.1:-232 BC007935:-232 BC030151:-232 ENST00000533397.5:-242 uc064rqb.1:-242 BC012197:-433 ENST00000528957.5:-440 uc064rpz.1:-440 BC013104:-467 BC000077:-470 ENST00000532702.1:-473 uc064rqc.1:-473 ENST00000394920.6:-478 NM_033301:-478 NM_001317782:-478 NM_001317771:-478 uc003zeb.4:-478 ENST00000529163.5:-479 uc064rpv.1:-479 AK301073:-479 D28421:-479 AK289459:-485 |
TATA-Box annotation
| Distance to TSS: | 82 |
|---|---|
| Nearest PromoterID: | NR_106909 |
| Entrez ID: | 102465978 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106909 |
| Nearest Ensembl: | ENSG00000283764 |
| Gene Name: | MIR6850 |
| Gene Alias: | hsa-mir-6850 |
| Gene Description: | microRNA 6850 |
| Gene Type: | ncRNA |
| CpG%: | 0.13 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
