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Difference between revisions of "TSS:Hg 102363.1"

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Line 3: Line 3:
 
|GLYT2=
 
|GLYT2=
 
|a1/3GTP=
 
|a1/3GTP=
|all_trans=BC045756:0 ENST00000373793.3:47 ENST00000481534.5:106 ENST00000495328.5:106 AF378121:106 AF378123:106 AF378122:106 ENST00000481799.5:-139 NR_003191:-139 NR_045211:-139
+
|all_trans=HGNC:4253
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.13
 
|cpg_percent=0.13
Line 12: Line 12:
 
|entrez_id=2681
 
|entrez_id=2681
 
|gc_percent=0.746269
 
|gc_percent=0.746269
|gene_alias=GGTA
+
|gene_alias=GGTA{{!}}GGTA1{{!}}GLYT2{{!}}a1/3GTP
|gene_description="glycoprotein, alpha-galactosyltransferase 1 pseudogene"
+
|gene_description=glycoprotein alpha-galactosyltransferase 1, pseudogene
 
|gene_id=2681
 
|gene_id=2681
|gene_name="glycoprotein, alpha-galactosyltransferase 1 pseudogene"
+
|gene_name=glycoprotein alpha-galactosyltransferase 1 (inactive)
 
|gene_source=HGNC:4253
 
|gene_source=HGNC:4253
|gene_symbol=GGTA1P
+
|gene_symbol=GGTA1
 
|gene_synonyms=
 
|gene_synonyms=
 
|gene_type=pseudo
 
|gene_type=pseudo
 
|hgnc_mgi_id=HGNC:4253
 
|hgnc_mgi_id=HGNC:4253
 
|nearest_ensembl=ENSG00000204136
 
|nearest_ensembl=ENSG00000204136
|nearest_promoter_id=NR_045211
+
|nearest_promoter_id=NR_003191
 
|nearest_refseq=NR_003191
 
|nearest_refseq=NR_003191
 
|nearest_unigene=Hs.97469
 
|nearest_unigene=Hs.97469
|num_trans=10
+
|num_trans=2681
 
|species=human
 
|species=human
 
|start=121499862
 
|start=121499862

Latest revision as of 18:25, 19 July 2021

Basic information about the TSS


TSS ID:hg_102363.1
Species:human
Chr:chr9
TSS Classification:yes
Start:121499862
End:121499888
Strand:-
TSS Score:1
Start of the center position in the TSS region:121499875
End of the center position in the TSS region:121499876



Gene and protein annotation


Transcript_name:BC045756
Distance:0
GeneID:2681
HGNC/MGI_ID:HGNC:4253
UniProt_ID:
Gene_name:glycoprotein alpha-galactosyltransferase 1 (inactive)
Gene_symbol:GGTA1
Gene_synonyms:
Gene_source:HGNC:4253



Transcript annotation


Transcript_name:BC045756
Distance:0
Num_trans:2681
All_trans:HGNC:4253



TATA-Box annotation


Distance to TSS:152
Nearest PromoterID:NR_003191
Entrez ID:2681
Nearest Unigene:Hs.97469
Nearest Refseq:NR_003191
Nearest Ensembl:ENSG00000204136
Gene Name:glycoprotein alpha-galactosyltransferase 1 (inactive)
Gene Alias:GGTA|GGTA1|GLYT2|a1/3GTP
Gene Description:glycoprotein alpha-galactosyltransferase 1, pseudogene
Gene Type:pseudo
CpG%:0.13
GC%:0.746269
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):