Difference between revisions of "TSS:Hg 219917.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:17181 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=19 | |distance=19 | ||
| − | |distance_to_tss= | + | |distance_to_tss=606 |
|end=129641545 | |end=129641545 | ||
|end_of_center_position=129641545 | |end_of_center_position=129641545 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:17181 | |hgnc_mgi_id=HGNC:17181 | ||
|nearest_ensembl=ENSG00000148331 | |nearest_ensembl=ENSG00000148331 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_177999 |
|nearest_refseq=NM_017873 | |nearest_refseq=NM_017873 | ||
|nearest_unigene=Hs.125037 | |nearest_unigene=Hs.125037 | ||
| − | |num_trans= | + | |num_trans=140459 |
|species=human | |species=human | ||
|start=129641544 | |start=129641544 | ||
|start_of_center_position=129641544 | |start_of_center_position=129641544 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=36(GTTTTTATAGAC,+,0.00) |
|transcript_name=BX648923 | |transcript_name=BX648923 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 07:23, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 129641544 |
|---|---|
| End of the center position in the TSS region: | 129641545 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BX648923 |
|---|---|
| Distance: | 19 |
| Num_trans: | 140459 |
| All_trans: | HGNC:17181 |
TATA-Box annotation
| Distance to TSS: | 606 |
|---|---|
| Nearest PromoterID: | NM_177999 |
| Entrez ID: | 140459 |
| Nearest Unigene: | Hs.125037 |
| Nearest Refseq: | NM_017873 |
| Nearest Ensembl: | ENSG00000148331 |
| Gene Name: | ankyrin repeat and SOCS box containing 6 |
| Gene Alias: | - |
| Gene Description: | ankyrin repeat and SOCS box containing 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 36(GTTTTTATAGAC,+,0.00) |
