Difference between revisions of "TSS:Hg 219954.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|SNAP190= | |SNAP190= | ||
| − | |all_trans=NM_003086:-3 BC172433:5 ENST00000298532.2 | + | |all_trans=NM_003086:-3 BC172433:5 ENST00000298532.2:-363 AF032387:-363 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 10: | Line 10: | ||
|entrez_id=6621 | |entrez_id=6621 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=PTFalpha | + | |gene_alias=PTFalpha{{!}}SNAP190 |
|gene_description=small nuclear RNA activating complex polypeptide 4 | |gene_description=small nuclear RNA activating complex polypeptide 4 | ||
|gene_id=6621 | |gene_id=6621 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003086 | |nearest_refseq=NM_003086 | ||
|nearest_unigene=Hs.113265 | |nearest_unigene=Hs.113265 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=136398433 | |start=136398433 | ||
|start_of_center_position=136398433 | |start_of_center_position=136398433 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_003086 | + | |transcript_name=NM_003086.3 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_219954.1 | |tss_id=hg_219954.1 | ||
Latest revision as of 07:23, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 136398433 |
|---|---|
| End of the center position in the TSS region: | 136398434 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_003086.3 |
|---|---|
| Distance: | -3 |
| Num_trans: | 4 |
| All_trans: | NM_003086:-3 BC172433:5 ENST00000298532.2:-363 AF032387:-363 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_003086 |
| Entrez ID: | 6621 |
| Nearest Unigene: | Hs.113265 |
| Nearest Refseq: | NM_003086 |
| Nearest Ensembl: | ENSG00000165684 |
| Gene Name: | small nuclear RNA activating complex polypeptide 4 |
| Gene Alias: | PTFalpha|SNAP190 |
| Gene Description: | small nuclear RNA activating complex polypeptide 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
