Difference between revisions of "TSS:Hg 243542.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=DQ596276:-41 DQ598641:187 AB026838:187 LX251243:187 LZ235584:187 S55822:187 ENST00000361390.2:264 LP790444:264 AK074482:264 LP790447:264 LP790441:264 BC017294:278 BC061915:279 AF216862:305 AB462505:-331 |
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance=- | + | |distance=-41 |
| − | |distance_to_tss= | + | |distance_to_tss=17779 |
| − | |end= | + | |end=3043 |
|end_of_center_position=3043 | |end_of_center_position=3043 | ||
|entrez_id=158219 | |entrez_id=158219 | ||
| Line 12: | Line 12: | ||
|gene_description=tetratricopeptide repeat domain 39B | |gene_description=tetratricopeptide repeat domain 39B | ||
|gene_id=158219 | |gene_id=158219 | ||
| − | |gene_name= | + | |gene_name=TTC39B |
|gene_source=HGNC:23704 | |gene_source=HGNC:23704 | ||
|gene_symbol=TTC39B | |gene_symbol=TTC39B | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_152574 | |nearest_refseq=NM_152574 | ||
|nearest_unigene=Hs.563630 | |nearest_unigene=Hs.563630 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
| − | |start= | + | |start=3042 |
|start_of_center_position=3042 | |start_of_center_position=3042 | ||
| − | |strand= | + | |strand=+ |
| − | |transcript_name= | + | |transcript_name=DQ596276 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243542.1 | |tss_id=hg_243542.1 | ||
Latest revision as of 12:53, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3042 |
|---|---|
| End of the center position in the TSS region: | 3043 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | DQ596276 |
|---|---|
| Distance: | -41 |
| Num_trans: | 15 |
| All_trans: | DQ596276:-41 DQ598641:187 AB026838:187 LX251243:187 LZ235584:187 S55822:187 ENST00000361390.2:264 LP790444:264 AK074482:264 LP790447:264 LP790441:264 BC017294:278 BC061915:279 AF216862:305 AB462505:-331 |
TATA-Box annotation
| Distance to TSS: | 17779 |
|---|---|
| Nearest PromoterID: | NM_001168342 |
| Entrez ID: | 158219 |
| Nearest Unigene: | Hs.563630 |
| Nearest Refseq: | NM_152574 |
| Nearest Ensembl: | ENSG00000155158 |
| Gene Name: | TTC39B |
| Gene Alias: | C9orf52 |
| Gene Description: | tetratricopeptide repeat domain 39B |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
