Difference between revisions of "TSS:Hg 243564.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=DQ600534:-67 AK026547:108 ENST00000361624.2:-395 LP790408:-395 LP790409:-395 LP790410:-395 LP803414:-395 LP803415:-395 LP803416:-395 LY485905:-395 LY485906:-395 LY485907:-395 BX648054:-398 BC024102:-490 |
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-67 |
|distance_to_tss=123 | |distance_to_tss=123 | ||
| − | |end= | + | |end=6304 |
|end_of_center_position=6302 | |end_of_center_position=6302 | ||
|entrez_id=25769 | |entrez_id=25769 | ||
| Line 12: | Line 12: | ||
|gene_description=solute carrier family 24 member 2 | |gene_description=solute carrier family 24 member 2 | ||
|gene_id=25769 | |gene_id=25769 | ||
| − | |gene_name= | + | |gene_name=SLC24A2 |
|gene_source=HGNC:10976 | |gene_source=HGNC:10976 | ||
|gene_symbol=SLC24A2 | |gene_symbol=SLC24A2 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:10976 | |hgnc_mgi_id=HGNC:10976 | ||
|nearest_ensembl=ENSG00000155886 | |nearest_ensembl=ENSG00000155886 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001193288 |
|nearest_refseq=NM_020344 | |nearest_refseq=NM_020344 | ||
|nearest_unigene=Hs.283014 | |nearest_unigene=Hs.283014 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
| − | |start= | + | |start=6298 |
|start_of_center_position=6301 | |start_of_center_position=6301 | ||
| − | |strand= | + | |strand=+ |
| − | |transcript_name= | + | |transcript_name=DQ600534 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243564.1 | |tss_id=hg_243564.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 12:53, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 6301 |
|---|---|
| End of the center position in the TSS region: | 6302 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | DQ600534 |
|---|---|
| Distance: | -67 |
| Num_trans: | 14 |
| All_trans: | DQ600534:-67 AK026547:108 ENST00000361624.2:-395 LP790408:-395 LP790409:-395 LP790410:-395 LP803414:-395 LP803415:-395 LP803416:-395 LY485905:-395 LY485906:-395 LY485907:-395 BX648054:-398 BC024102:-490 |
TATA-Box annotation
| Distance to TSS: | 123 |
|---|---|
| Nearest PromoterID: | NM_001193288 |
| Entrez ID: | 25769 |
| Nearest Unigene: | Hs.283014 |
| Nearest Refseq: | NM_020344 |
| Nearest Ensembl: | ENSG00000155886 |
| Gene Name: | SLC24A2 |
| Gene Alias: | NCKX2 |
| Gene Description: | solute carrier family 24 member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
