Difference between revisions of "TSS:Hg 243612.1"
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{{TSSDetail | {{TSSDetail | ||
|BSAP= | |BSAP= | ||
| − | |all_trans= | + | |all_trans=BC023992:-49 ENST00000361227.2:283 LP790415:283 LP803422:283 LY485912:283 KC154029:-419 HQ013247:-500 |
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=-49 |
| − | |distance_to_tss=- | + | |distance_to_tss=-232 |
| − | |end= | + | |end=9776 |
|end_of_center_position=9775 | |end_of_center_position=9775 | ||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=ALL3 | + | |gene_alias=ALL3{{!}}BSAP |
|gene_description=paired box 5 | |gene_description=paired box 5 | ||
|gene_id=5079 | |gene_id=5079 | ||
| − | |gene_name= | + | |gene_name=PAX5 |
|gene_source=HGNC:8619 | |gene_source=HGNC:8619 | ||
|gene_symbol=PAX5 | |gene_symbol=PAX5 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:8619 | |hgnc_mgi_id=HGNC:8619 | ||
|nearest_ensembl=ENSG00000196092 | |nearest_ensembl=ENSG00000196092 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001280553 |
|nearest_refseq=NM_016734 | |nearest_refseq=NM_016734 | ||
|nearest_unigene=Hs.654464 | |nearest_unigene=Hs.654464 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
| − | |start= | + | |start=9773 |
|start_of_center_position=9774 | |start_of_center_position=9774 | ||
| − | |strand= | + | |strand=+ |
| − | |tata_box= | + | |tata_box=-9(CCCTATAAAAGT,-,0.00) |
| − | |transcript_name= | + | |transcript_name=BC023992 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243612.1 | |tss_id=hg_243612.1 | ||
Latest revision as of 12:54, 14 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 9774 |
|---|---|
| End of the center position in the TSS region: | 9775 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC023992 |
|---|---|
| Distance: | -49 |
| Num_trans: | 7 |
| All_trans: | BC023992:-49 ENST00000361227.2:283 LP790415:283 LP803422:283 LY485912:283 KC154029:-419 HQ013247:-500 |
TATA-Box annotation
| Distance to TSS: | -232 |
|---|---|
| Nearest PromoterID: | NM_001280553 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | PAX5 |
| Gene Alias: | ALL3|BSAP |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -9(CCCTATAAAAGT,-,0.00) |
