Difference between revisions of "TSS:Mm 100699.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF225627:29 MA461204:29 LF225626:324 MA461203:324 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=29 |
|distance_to_tss=5800 | |distance_to_tss=5800 | ||
|end=3533518 | |end=3533518 | ||
| Line 13: | Line 14: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000020439 | |nearest_ensembl=ENSMUSG00000020439 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001284428 |
|nearest_refseq=NM_013870 | |nearest_refseq=NM_013870 | ||
|nearest_unigene=Mm.188516 | |nearest_unigene=Mm.188516 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=3533466 | |start=3533466 | ||
|start_of_center_position=3533492 | |start_of_center_position=3533492 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF225627 MA461204 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_100699.1 | |tss_id=mm_100699.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:23, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 3533492 |
|---|---|
| End of the center position in the TSS region: | 3533493 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF225627 MA461204 |
|---|---|
| Distance: | 29 |
| Num_trans: | 4 |
| All_trans: | LF225627:29 MA461204:29 LF225626:324 MA461203:324 |
TATA-Box annotation
| Distance to TSS: | 5800 |
|---|---|
| Nearest PromoterID: | NM_001284428 |
| Entrez ID: | 29856 |
| Nearest Unigene: | Mm.188516 |
| Nearest Refseq: | NM_013870 |
| Nearest Ensembl: | ENSMUSG00000020439 |
| Gene Name: | Smtn |
| Gene Alias: | smsmo |
| Gene Description: | smoothelin |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
