Difference between revisions of "TSS:Hg 243971.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 3: | Line 3: | ||
|MIG6= | |MIG6= | ||
|RPL44= | |RPL44= | ||
| − | |all_trans= | + | |all_trans=NR_135591:2 KJ902051:30 BT006649:32 AB385398:32 AF132609:32 BC013737:50 ENST00000440653.1:-111 ENST00000468949.1:119 AK303012:119 ENST00000443563.5:-146 ENST00000647398.1:227 ENST00000493923.1:247 ENST00000489352.5:-454 AK095124:-468 BC011498:-471 ENST00000643934.1:-474 ENST00000441703.6:-475 ENST00000644068.1:-493 AK295884:-496 |
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=2 |
| − | |distance_to_tss= | + | |distance_to_tss=4440 |
| − | |end= | + | |end=48802661 |
|end_of_center_position=48802661 | |end_of_center_position=48802661 | ||
| − | |entrez_id= | + | |entrez_id=100529097 |
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=RPL36A-HNRNPH2 readthrough |
| − | |gene_name= | + | |gene_id=10013 |
| + | |gene_name=histone deacetylase 6 | ||
| + | |gene_source=HGNC:14064 | ||
| + | |gene_symbol=HDAC6 | ||
| + | |gene_synonyms=FLJ16239 HD6 JM21 KIAA0901 PPP1R90 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |nearest_ensembl= | + | |hgnc_mgi_id=HGNC:14064 |
| − | |nearest_promoter_id= | + | |nearest_ensembl= |
| − | |nearest_refseq= | + | |nearest_promoter_id=NM_001199974 |
| + | |nearest_refseq=NM_001199973 | ||
|nearest_unigene=Hs.432485 | |nearest_unigene=Hs.432485 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
| − | |start= | + | |start=48802660 |
|start_of_center_position=48802660 | |start_of_center_position=48802660 | ||
| − | |strand= | + | |strand=+ |
| − | |tata_box= | + | |tata_box=34(CTTTTAATAGCC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=NR_135591.1 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243971.1 | |tss_id=hg_243971.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 15:20, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48802660 |
|---|---|
| End of the center position in the TSS region: | 48802661 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_135591.1 |
|---|---|
| Distance: | 2 |
| Num_trans: | 19 |
| All_trans: | NR_135591:2 KJ902051:30 BT006649:32 AB385398:32 AF132609:32 BC013737:50 ENST00000440653.1:-111 ENST00000468949.1:119 AK303012:119 ENST00000443563.5:-146 ENST00000647398.1:227 ENST00000493923.1:247 ENST00000489352.5:-454 AK095124:-468 BC011498:-471 ENST00000643934.1:-474 ENST00000441703.6:-475 ENST00000644068.1:-493 AK295884:-496 |
TATA-Box annotation
| Distance to TSS: | 4440 |
|---|---|
| Nearest PromoterID: | NM_001199974 |
| Entrez ID: | 100529097 |
| Nearest Unigene: | Hs.432485 |
| Nearest Refseq: | NM_001199973 |
| Nearest Ensembl: | |
| Gene Name: | histone deacetylase 6 |
| Gene Alias: | - |
| Gene Description: | RPL36A-HNRNPH2 readthrough |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 34(CTTTTAATAGCC,+,0.00) |
