Difference between revisions of "TSS:Mm 163001.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|Aag= | |Aag= | ||
|Mid1= | |Mid1= | ||
| − | |all_trans= | + | |all_trans=MGI:109258 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 13: | Line 13: | ||
|entrez_id=268395 | |entrez_id=268395 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| − | |gene_alias=9830006D05 | + | |gene_alias=9830006D05{{!}}AI326268{{!}}APNG{{!}}Aag{{!}}Mid1 |
|gene_description=N-methylpurine-DNA glycosylase | |gene_description=N-methylpurine-DNA glycosylase | ||
|gene_id=17168 | |gene_id=17168 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_010822 | |nearest_refseq=NM_010822 | ||
|nearest_unigene=Mm.263161 | |nearest_unigene=Mm.263161 | ||
| − | |num_trans= | + | |num_trans=17168 |
|species=mouse | |species=mouse | ||
|start=32237238 | |start=32237238 | ||
|start_of_center_position=32237238 | |start_of_center_position=32237238 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-24(AGCTAGAAAAGC,-,0.00),-4(ACCTTTTAATGG,-,0.00),-2(CTTTTAATGGCG,+,0.00) |
|transcript_name=AK184012 | |transcript_name=AK184012 | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 09:35, 27 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 32237238 |
|---|---|
| End of the center position in the TSS region: | 32237239 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK184012 |
|---|---|
| Distance: | 351 |
| Num_trans: | 17168 |
| All_trans: | MGI:109258 |
TATA-Box annotation
| Distance to TSS: | 10734 |
|---|---|
| Nearest PromoterID: | NM_010822 |
| Entrez ID: | 268395 |
| Nearest Unigene: | Mm.263161 |
| Nearest Refseq: | NM_010822 |
| Nearest Ensembl: | ENSMUSG00000020287 |
| Gene Name: | nitrogen permease regulator-like 3 |
| Gene Alias: | 9830006D05|AI326268|APNG|Aag|Mid1 |
| Gene Description: | N-methylpurine-DNA glycosylase |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -24(AGCTAGAAAAGC,-,0.00),-4(ACCTTTTAATGG,-,0.00),-2(CTTTTAATGGCG,+,0.00) |
