Difference between revisions of "TSS:Hg 103697.1"
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:54134 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=-11 |
|distance_to_tss=-55345 | |distance_to_tss=-55345 | ||
|end=6271219 | |end=6271219 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2649 |
| − | |gene_name= | + | |gene_id=399715 |
| + | |gene_name=long intergenic non-protein coding RNA 2649 | ||
| + | |gene_source=HGNC:54134 | ||
| + | |gene_symbol=LINC02649 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:54134 | ||
|nearest_ensembl=ENSG00000215244 | |nearest_ensembl=ENSG00000215244 | ||
|nearest_promoter_id=NR_040079 | |nearest_promoter_id=NR_040079 | ||
|nearest_refseq=NR_040079 | |nearest_refseq=NR_040079 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=399715 |
|species=human | |species=human | ||
|start=6271179 | |start=6271179 | ||
|start_of_center_position=6271199 | |start_of_center_position=6271199 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-36(GCATTTAAATGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000659311.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_103697.1 | |tss_id=hg_103697.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:54, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 6271199 |
|---|---|
| End of the center position in the TSS region: | 6271200 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000659311.1 |
|---|---|
| Distance: | -11 |
| Num_trans: | 399715 |
| All_trans: | HGNC:54134 |
TATA-Box annotation
| Distance to TSS: | -55345 |
|---|---|
| Nearest PromoterID: | NR_040079 |
| Entrez ID: | 399715 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_040079 |
| Nearest Ensembl: | ENSG00000215244 |
| Gene Name: | long intergenic non-protein coding RNA 2649 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2649 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(GCATTTAAATGG,-,0.00) |
