Difference between revisions of "TSS:Hg 103835.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 6: | Line 6: | ||
|ETR3= | |ETR3= | ||
|NAPOR= | |NAPOR= | ||
| + | |all_trans=NM_001326327:31 NM_001326328:31 NM_001326326:31 ENST00000636488.1:-59 ENST00000638035.1:-67 ENST00000637215.1:-286 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=31 |
| − | |distance_to_tss=- | + | |distance_to_tss=-37 |
|end=10798694 | |end=10798694 | ||
|end_of_center_position=10798689 | |end_of_center_position=10798689 | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=BRUNOL3 | + | |gene_alias=BRUNOL3{{!}}CELF-2{{!}}CUG-BP2{{!}}CUGBP2{{!}}ETR-3{{!}}ETR3{{!}}NAPOR |
| − | |gene_description= | + | |gene_description=CUGBP Elav-like family member 2 |
| − | |gene_name=CELF2 | + | |gene_id=10659 |
| + | |gene_name=CUGBP Elav-like family member 2 | ||
| + | |gene_source=HGNC:2550 | ||
| + | |gene_symbol=CELF2 | ||
| + | |gene_synonyms=BRUNOL3 Etr-3 NAPOR-2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2550 | ||
|nearest_ensembl=ENSG00000048740 | |nearest_ensembl=ENSG00000048740 | ||
|nearest_promoter_id=NM_001326328 | |nearest_promoter_id=NM_001326328 | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=10798682 | |start=10798682 | ||
|start_of_center_position=10798688 | |start_of_center_position=10798688 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001326326.2 NM_001326327.2 NM_001326328.2 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_103835.1 | |tss_id=hg_103835.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A0A1B0GU44 A0A1B0GUN8 O95319 | ||
}} | }} | ||
Latest revision as of 18:57, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 10798688 |
|---|---|
| End of the center position in the TSS region: | 10798689 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001326326.2 NM_001326327.2 NM_001326328.2 |
|---|---|
| Distance: | 31 |
| Num_trans: | 6 |
| All_trans: | NM_001326327:31 NM_001326328:31 NM_001326326:31 ENST00000636488.1:-59 ENST00000638035.1:-67 ENST00000637215.1:-286 |
TATA-Box annotation
| Distance to TSS: | -37 |
|---|---|
| Nearest PromoterID: | NM_001326328 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
