Difference between revisions of "TSS:Hg 232141.1"
From referenceTSS
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| Line 11: | Line 11: | ||
|TK14= | |TK14= | ||
|TK25= | |TK25= | ||
| − | |all_trans= | + | |all_trans=HGNC:16827 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance=- | + | |distance=-14 |
|distance_to_tss=16 | |distance_to_tss=16 | ||
| − | |end= | + | |end=12217450 |
|end_of_center_position=12217439 | |end_of_center_position=12217439 | ||
|entrez_id=2263 | |entrez_id=2263 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=BBDS | + | |gene_alias=BBDS{{!}}BEK{{!}}BFR-1{{!}}CD332{{!}}CEK3{{!}}CFD1{{!}}ECT1{{!}}JWS{{!}}K-SAM{{!}}KGFR{{!}}TK14{{!}}TK25 |
|gene_description=fibroblast growth factor receptor 2 | |gene_description=fibroblast growth factor receptor 2 | ||
| − | |gene_id= | + | |gene_id=8872 |
| − | |gene_name= | + | |gene_name=cell division cycle 123 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:16827 |
| − | |gene_symbol= | + | |gene_symbol=CDC123 |
| − | |gene_synonyms= | + | |gene_synonyms=D123 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:16827 |
|nearest_ensembl=ENSG00000066468 | |nearest_ensembl=ENSG00000066468 | ||
|nearest_promoter_id=NM_001144916 | |nearest_promoter_id=NM_001144916 | ||
|nearest_refseq=NM_000141 | |nearest_refseq=NM_000141 | ||
|nearest_unigene=Hs.533683 | |nearest_unigene=Hs.533683 | ||
| − | |num_trans= | + | |num_trans=8872 |
|species=human | |species=human | ||
| − | |start= | + | |start=12217427 |
|start_of_center_position=12217438 | |start_of_center_position=12217438 | ||
| − | |strand= | + | |strand=+ |
| − | |tata_box= | + | |tata_box=64(GCTTTTAAAAAG,+,0.00),64(GCTTTTAAAAAG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000498747.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232141.1 | |tss_id=hg_232141.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 11:04, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 12217438 |
|---|---|
| End of the center position in the TSS region: | 12217439 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000498747.1 |
|---|---|
| Distance: | -14 |
| Num_trans: | 8872 |
| All_trans: | HGNC:16827 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_001144916 |
| Entrez ID: | 2263 |
| Nearest Unigene: | Hs.533683 |
| Nearest Refseq: | NM_000141 |
| Nearest Ensembl: | ENSG00000066468 |
| Gene Name: | cell division cycle 123 |
| Gene Alias: | BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 |
| Gene Description: | fibroblast growth factor receptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 64(GCTTTTAAAAAG,+,0.00),64(GCTTTTAAAAAG,-,0.00) |
