Difference between revisions of "TSS:Hg 104261.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans= |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC100499489 | |gene_description=uncharacterized LOC100499489 | ||
| − | |gene_id= | + | |gene_id= |
| − | |gene_name= | + | |gene_name=LOC100499489 |
|gene_source=EntrezGene:100289455 | |gene_source=EntrezGene:100289455 | ||
|gene_symbol=LOC100289455 | |gene_symbol=LOC100289455 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_036533 | |nearest_refseq=NR_036533 | ||
|nearest_unigene=Hs.7444 | |nearest_unigene=Hs.7444 | ||
| − | |num_trans= | + | |num_trans= |
|species=human | |species=human | ||
|start=22437001 | |start=22437001 | ||
|start_of_center_position=22437006 | |start_of_center_position=22437006 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-50(GGCTCTATAAAG,-,0.00),-48(CTCTATAAAGCC,+,0.00),-34(GGCTCTATAAAG,-,0.00),-32(CTCTATAAAGCC,+,0.00) |
|transcript_name=AK295718 | |transcript_name=AK295718 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 19:06, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 22437006 |
|---|---|
| End of the center position in the TSS region: | 22437007 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK295718 |
|---|---|
| Distance: | 68 |
| Num_trans: | |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 922 |
|---|---|
| Nearest PromoterID: | NR_036533 |
| Entrez ID: | 100499489 |
| Nearest Unigene: | Hs.7444 |
| Nearest Refseq: | NR_036533 |
| Nearest Ensembl: | |
| Gene Name: | LOC100499489 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100499489 |
| Gene Type: | ncRNA |
| CpG%: | 0.135 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -50(GGCTCTATAAAG,-,0.00),-48(CTCTATAAAGCC,+,0.00),-34(GGCTCTATAAAG,-,0.00),-32(CTCTATAAAGCC,+,0.00) |
