Difference between revisions of "TSS:Hg 104267.1"
From referenceTSS
| Line 3: | Line 3: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-14801 | |distance_to_tss=-14801 | ||
|end=22913232 | |end=22913232 | ||
| Line 9: | Line 9: | ||
|entrez_id=219681 | |entrez_id=219681 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
| − | |gene_alias=CT81 | + | |gene_alias=CT81{{!}}KU-CT-1 |
|gene_description=armadillo repeat containing 3 | |gene_description=armadillo repeat containing 3 | ||
|gene_name=ARMC3 | |gene_name=ARMC3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000165309 | |nearest_ensembl=ENSG00000165309 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282747 |
|nearest_refseq=NM_173081 | |nearest_refseq=NM_173081 | ||
|nearest_unigene=Hs.659807 | |nearest_unigene=Hs.659807 | ||
| Line 22: | Line 22: | ||
|start_of_center_position=22913222 | |start_of_center_position=22913222 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=51(TCCTCTTAAGGG,-,0.00),52(CCTCTTAAGGGC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 17:46, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22913222 |
|---|---|
| End of the center position in the TSS region: | 22913223 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -14801 |
|---|---|
| Nearest PromoterID: | NM_001282747 |
| Entrez ID: | 219681 |
| Nearest Unigene: | Hs.659807 |
| Nearest Refseq: | NM_173081 |
| Nearest Ensembl: | ENSG00000165309 |
| Gene Name: | ARMC3 |
| Gene Alias: | CT81|KU-CT-1 |
| Gene Description: | armadillo repeat containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 51(TCCTCTTAAGGG,-,0.00),52(CCTCTTAAGGGC,+,0.00) |
