Difference between revisions of "TSS:Hg 104287.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|OTDC1= | |OTDC1= | ||
| − | |all_trans= | + | |all_trans=HGNC:27346 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| − | |distance= | + | |distance=-38 |
|distance_to_tss=-135 | |distance_to_tss=-135 | ||
|end=23439155 | |end=23439155 | ||
| Line 10: | Line 10: | ||
|entrez_id=220213 | |entrez_id=220213 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=DUBA7 | + | |gene_alias=DUBA7{{!}}OTDC1 |
|gene_description=OTU deubiquitinase 1 | |gene_description=OTU deubiquitinase 1 | ||
|gene_id=220213 | |gene_id=220213 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_001145373 | |nearest_refseq=NM_001145373 | ||
|nearest_unigene=Hs.499042 | |nearest_unigene=Hs.499042 | ||
| − | |num_trans= | + | |num_trans=220213 |
|species=human | |species=human | ||
|start=23439112 | |start=23439112 | ||
|start_of_center_position=23439133 | |start_of_center_position=23439133 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000376495.5 |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_104287.1 | |tss_id=hg_104287.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q5VV17 | |uniprot_id=Q5VV17 | ||
}} | }} | ||
Latest revision as of 19:06, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23439133 |
|---|---|
| End of the center position in the TSS region: | 23439134 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376495.5 |
|---|---|
| Distance: | -38 |
| Num_trans: | 220213 |
| All_trans: | HGNC:27346 |
TATA-Box annotation
| Distance to TSS: | -135 |
|---|---|
| Nearest PromoterID: | NM_001145373 |
| Entrez ID: | 220213 |
| Nearest Unigene: | Hs.499042 |
| Nearest Refseq: | NM_001145373 |
| Nearest Ensembl: | ENSG00000165312 |
| Gene Name: | OTU deubiquitinase 1 |
| Gene Alias: | DUBA7|OTDC1 |
| Gene Description: | OTU deubiquitinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
