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Difference between revisions of "TSS:Hg 104526.1"

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{{TSSDetail
 
{{TSSDetail
−
|all_trans=ENST00000423223.5:0 ENST00000445521.5:0 ENST00000623175.3:0 uc057smo.1:0 uc057smp.1:0 uc001ium.3:0 BC063483:0 AL832706:1 ENST00000446807.5:-2 uc057smn.1:-2 BC031656:-3 ENST00000438202.5:4 uc057smq.1:4 ENST00000427063.6:-10 uc001iun.3:-10 BC073888:-10 ENST00000414457.5:-24 uc001iup.4:-24 ENST00000608994.5:-25 ENST00000609413.5:-25 uc057sml.1:-25 uc057smm.1:-25 AK056080:-25 BC107795:-28 BC050354:-35 ENST00000413405.5:-43 uc001iuq.4:-43 BC066966:-43 NR_110929:-48 NR_110927:-48 NR_110926:-48 NR_110925:-48 NR_110924:-48 NR_110923:-48 NR_110922:-48 NR_110921:-48 NR_110920:-48 NR_003930:-48 ENST00000430295.5:-180 uc057smk.1:-180
+
|all_trans=HGNC:51219
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.085
 
|cpg_percent=0.085
Line 15: Line 15:
 
|gene_source=HGNC:51219
 
|gene_source=HGNC:51219
 
|gene_symbol=SVIL-AS1
 
|gene_symbol=SVIL-AS1
−
|gene_synonyms=
+
|gene_synonyms=RP11-534G20.3
 
|gene_type=ncRNA
 
|gene_type=ncRNA
 
|hgnc_mgi_id=HGNC:51219
 
|hgnc_mgi_id=HGNC:51219
 
|nearest_ensembl=ENSG00000224597
 
|nearest_ensembl=ENSG00000224597
−
|nearest_promoter_id=NR_110926
+
|nearest_promoter_id=NR_110920
 
|nearest_refseq=NR_003930
 
|nearest_refseq=NR_003930
 
|nearest_unigene=Hs.499209
 
|nearest_unigene=Hs.499209
−
|num_trans=40
+
|num_trans=102724316
 
|species=human
 
|species=human
 
|start=29409581
 
|start=29409581
 
|start_of_center_position=29409589
 
|start_of_center_position=29409589
 
|strand=+
 
|strand=+
−
|transcript_name=ENST00000423223.5 ENST00000445521.5 ENST00000623175.3 uc057smo.1 uc057smp.1 uc001ium.3 BC063483
+
|transcript_name=ENST00000423223.5 ENST00000445521.5 ENST00000623175.3 BC063483
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_104526.1
 
|tss_id=hg_104526.1

Latest revision as of 19:12, 19 July 2021

Basic information about the TSS

TSS ID:hg_104526.1
Species:human
Chr:chr10
TSS Classification:yes
Start:29409581
End:29409598
Strand:+
TSS Score:1
Start of the center position in the TSS region:29409589
End of the center position in the TSS region:29409590



Gene and protein annotation

Transcript_name:ENST00000423223.5 ENST00000445521.5 ENST00000623175.3 BC063483
Distance:0
GeneID:102724316
HGNC/MGI_ID:HGNC:51219
UniProt_ID:
Gene_name:SVIL antisense RNA 1
Gene_symbol:SVIL-AS1
Gene_synonyms:RP11-534G20.3
Gene_source:HGNC:51219



Transcript annotation

Transcript_name:ENST00000423223.5 ENST00000445521.5 ENST00000623175.3 BC063483
Distance:0
Num_trans:102724316
All_trans:HGNC:51219



TATA-Box annotation

Distance to TSS:56
Nearest PromoterID:NR_110920
Entrez ID:102724316
Nearest Unigene:Hs.499209
Nearest Refseq:NR_003930
Nearest Ensembl:ENSG00000224597
Gene Name:SVIL antisense RNA 1
Gene Alias:-
Gene Description:SVIL antisense RNA 1
Gene Type:ncRNA
CpG%:0.085
GC%:0.666667
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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