Difference between revisions of "TSS:Hg 100494.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=45646 |entrez_id=51271 |gc_percent=0.437811 |gene_alias=NAG20|UAP|UBAP|UBAP-1 |gene_description=ubiquitin associated protein 1 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SPG80= | ||
| + | |UAP= | ||
| + | |UBAP= | ||
| + | |UBAP-1= | ||
| + | |all_trans=ENST00000372214.3:23 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance_to_tss= | + | |distance=23 |
| + | |distance_to_tss=45608 | ||
| + | |end=34224652 | ||
| + | |end_of_center_position=34224652 | ||
|entrez_id=51271 | |entrez_id=51271 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=NAG20 | + | |gene_alias=NAG20{{!}}SPG80{{!}}UAP{{!}}UBAP{{!}}UBAP-1 |
|gene_description=ubiquitin associated protein 1 | |gene_description=ubiquitin associated protein 1 | ||
|gene_name=UBAP1 | |gene_name=UBAP1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000165006 | |nearest_ensembl=ENSG00000165006 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016525 |
|nearest_refseq=NM_016525 | |nearest_refseq=NM_016525 | ||
|nearest_unigene=Hs.268963 | |nearest_unigene=Hs.268963 | ||
| − | |tata_box= | + | |num_trans=1 |
| + | |species=human | ||
| + | |start=34224650 | ||
| + | |start_of_center_position=34224651 | ||
| + | |strand=- | ||
| + | |tata_box=-20(TACTCTAAAAAC,-,0.00) | ||
| + | |transcript_name=ENST00000372214.3 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100494.1 | |tss_id=hg_100494.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34224651 |
|---|---|
| End of the center position in the TSS region: | 34224652 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372214.3 |
|---|---|
| Distance: | 23 |
| Num_trans: | 1 |
| All_trans: | ENST00000372214.3:23 |
TATA-Box annotation
| Distance to TSS: | 45608 |
|---|---|
| Nearest PromoterID: | NM_016525 |
| Entrez ID: | 51271 |
| Nearest Unigene: | Hs.268963 |
| Nearest Refseq: | NM_016525 |
| Nearest Ensembl: | ENSG00000165006 |
| Gene Name: | UBAP1 |
| Gene Alias: | NAG20|SPG80|UAP|UBAP|UBAP-1 |
| Gene Description: | ubiquitin associated protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -20(TACTCTAAAAAC,-,0.00) |
