Difference between revisions of "TSS:Hg 104689.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CCNX= | |CCNX= | ||
|CFP1= | |CFP1= | ||
| − | |all_trans=AB462996:-105 AM392857:-105 AF465728:-106 AF465729:-106 ENST00000492478.5 | + | |all_trans=LF342611:-3 MA578188:-3 LF342612:-101 MA578189:-101 AB462996:-105 AM392857:-105 AF465728:-106 AF465729:-106 ENST00000492478.5:-107 BC050310:-107 BC069224:-111 BC094815:-119 AL834355:-132 AK303283:-139 ENST00000265375.13:-285 ENST00000339497.7:-285 NM_001282853:-285 NM_001282852:-285 AF413522:-285 AY504868:-285 LF385229:-285 MA620806:-285 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance=- | + | |distance=-3 |
|distance_to_tss=286 | |distance_to_tss=286 | ||
|end=35337161 | |end=35337161 | ||
| Line 12: | Line 12: | ||
|entrez_id=219771 | |entrez_id=219771 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=C10orf9 | + | |gene_alias=C10orf9{{!}}CBCP1{{!}}CCNX{{!}}CFP1 |
|gene_description=cyclin Y | |gene_description=cyclin Y | ||
|gene_id=219771 | |gene_id=219771 | ||
| − | |gene_name= | + | |gene_name=CCNY |
|gene_source=HGNC:23354 | |gene_source=HGNC:23354 | ||
|gene_symbol=CCNY | |gene_symbol=CCNY | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:23354 | |hgnc_mgi_id=HGNC:23354 | ||
|nearest_ensembl=ENSG00000108100 | |nearest_ensembl=ENSG00000108100 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282852 |
|nearest_refseq=NM_145012 | |nearest_refseq=NM_145012 | ||
|nearest_unigene=Hs.14745 | |nearest_unigene=Hs.14745 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=35337158 | |start=35337158 | ||
|start_of_center_position=35337159 | |start_of_center_position=35337159 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF342611 MA578188 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104689.1 | |tss_id=hg_104689.1 | ||
Latest revision as of 17:56, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35337159 |
|---|---|
| End of the center position in the TSS region: | 35337160 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF342611 MA578188 |
|---|---|
| Distance: | -3 |
| Num_trans: | 22 |
| All_trans: | LF342611:-3 MA578188:-3 LF342612:-101 MA578189:-101 AB462996:-105 AM392857:-105 AF465728:-106 AF465729:-106 ENST00000492478.5:-107 BC050310:-107 BC069224:-111 BC094815:-119 AL834355:-132 AK303283:-139 ENST00000265375.13:-285 ENST00000339497.7:-285 NM_001282853:-285 NM_001282852:-285 AF413522:-285 AY504868:-285 LF385229:-285 MA620806:-285 |
TATA-Box annotation
| Distance to TSS: | 286 |
|---|---|
| Nearest PromoterID: | NM_001282852 |
| Entrez ID: | 219771 |
| Nearest Unigene: | Hs.14745 |
| Nearest Refseq: | NM_145012 |
| Nearest Ensembl: | ENSG00000108100 |
| Gene Name: | CCNY |
| Gene Alias: | C10orf9|CBCP1|CCNX|CFP1 |
| Gene Description: | cyclin Y |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
