Difference between revisions of "TSS:Hg 109446.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:19371 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=-108 | |distance=-108 | ||
| − | |distance_to_tss= | + | |distance_to_tss=78984 |
|end=59283573 | |end=59283573 | ||
|end_of_center_position=59283565 | |end_of_center_position=59283565 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:19371 | |hgnc_mgi_id=HGNC:19371 | ||
|nearest_ensembl=ENSG00000148541 | |nearest_ensembl=ENSG00000148541 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_198215 |
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| − | |num_trans= | + | |num_trans=220965 |
|species=human | |species=human | ||
|start=59283556 | |start=59283556 | ||
|start_of_center_position=59283564 | |start_of_center_position=59283564 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000513377 | + | |transcript_name=ENST00000513377.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_109446.1 | |tss_id=hg_109446.1 | ||
Latest revision as of 20:57, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 59283564 |
|---|---|
| End of the center position in the TSS region: | 59283565 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000513377.1 |
|---|---|
| Distance: | -108 |
| Num_trans: | 220965 |
| All_trans: | HGNC:19371 |
TATA-Box annotation
| Distance to TSS: | 78984 |
|---|---|
| Nearest PromoterID: | NM_198215 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
