Difference between revisions of "TSS:Hg 109451.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:19371 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-2 |
|end=59362600 | |end=59362600 | ||
|end_of_center_position=59362552 | |end_of_center_position=59362552 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:19371 | |hgnc_mgi_id=HGNC:19371 | ||
|nearest_ensembl=ENSG00000148541 | |nearest_ensembl=ENSG00000148541 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_198215 |
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| − | |num_trans= | + | |num_trans=220965 |
|species=human | |species=human | ||
|start=59362502 | |start=59362502 | ||
|start_of_center_position=59362551 | |start_of_center_position=59362551 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000618427.4 ENST00000618804.5 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 AK316542 BC036453 BC064431 AK289796 AK294805 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_109451.1 | |tss_id=hg_109451.1 | ||
Latest revision as of 20:58, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 59362551 |
|---|---|
| End of the center position in the TSS region: | 59362552 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000618427.4 ENST00000618804.5 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 AK316542 BC036453 BC064431 AK289796 AK294805 |
|---|---|
| Distance: | 0 |
| Num_trans: | 220965 |
| All_trans: | HGNC:19371 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_198215 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
