Difference between revisions of "TSS:Hg 109518.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|MRT37= | |MRT37= | ||
| − | |all_trans= | + | |all_trans=HGNC:494 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=45 | |distance=45 | ||
| − | |distance_to_tss= | + | |distance_to_tss=89342 |
|end=60300540 | |end=60300540 | ||
|end_of_center_position=60300534 | |end_of_center_position=60300534 | ||
|entrez_id=288 | |entrez_id=288 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| − | |gene_alias=ANKYRIN-G | + | |gene_alias=ANKYRIN-G{{!}}MRT37 |
|gene_description=ankyrin 3 | |gene_description=ankyrin 3 | ||
|gene_id=288 | |gene_id=288 | ||
| − | |gene_name= | + | |gene_name=ankyrin 3 |
|gene_source=HGNC:494 | |gene_source=HGNC:494 | ||
|gene_symbol=ANK3 | |gene_symbol=ANK3 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:494 | |hgnc_mgi_id=HGNC:494 | ||
|nearest_ensembl=ENSG00000151150 | |nearest_ensembl=ENSG00000151150 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001320874 |
|nearest_refseq=NM_001149 | |nearest_refseq=NM_001149 | ||
|nearest_unigene=Hs.499725 | |nearest_unigene=Hs.499725 | ||
| − | |num_trans= | + | |num_trans=288 |
|species=human | |species=human | ||
|start=60300526 | |start=60300526 | ||
|start_of_center_position=60300533 | |start_of_center_position=60300533 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(CTGTTTATAAGG,-,0.00),-33(GTTTATAAGGGC,+,0.00),18(CCATTTAAATAC,+,0.00) |
| − | |transcript_name=ENST00000503925 | + | |transcript_name=ENST00000503925.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_109518.1 | |tss_id=hg_109518.1 | ||
Latest revision as of 20:59, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 60300533 |
|---|---|
| End of the center position in the TSS region: | 60300534 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000503925.1 |
|---|---|
| Distance: | 45 |
| Num_trans: | 288 |
| All_trans: | HGNC:494 |
TATA-Box annotation
| Distance to TSS: | 89342 |
|---|---|
| Nearest PromoterID: | NM_001320874 |
| Entrez ID: | 288 |
| Nearest Unigene: | Hs.499725 |
| Nearest Refseq: | NM_001149 |
| Nearest Ensembl: | ENSG00000151150 |
| Gene Name: | ankyrin 3 |
| Gene Alias: | ANKYRIN-G|MRT37 |
| Gene Description: | ankyrin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(CTGTTTATAAGG,-,0.00),-33(GTTTATAAGGGC,+,0.00),18(CCATTTAAATAC,+,0.00) |
