Difference between revisions of "TSS:Hg 105301.1"
From referenceTSS
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|PRG= | |PRG= | ||
|PRG1= | |PRG1= | ||
| − | |all_trans= | + | |all_trans=HGNC:9361 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4 |
|end=69088117 | |end=69088117 | ||
|end_of_center_position=69088107 | |end_of_center_position=69088107 | ||
|entrez_id=5552 | |entrez_id=5552 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=PPG | + | |gene_alias=PPG{{!}}PRG{{!}}PRG1 |
|gene_description=serglycin | |gene_description=serglycin | ||
|gene_id=5552 | |gene_id=5552 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:9361 | |hgnc_mgi_id=HGNC:9361 | ||
|nearest_ensembl=ENSG00000122862 | |nearest_ensembl=ENSG00000122862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_002727 |
|nearest_refseq=NM_002727 | |nearest_refseq=NM_002727 | ||
|nearest_unigene=Hs.1908 | |nearest_unigene=Hs.1908 | ||
| − | |num_trans= | + | |num_trans=5552 |
|species=human | |species=human | ||
|start=69088096 | |start=69088096 | ||
|start_of_center_position=69088106 | |start_of_center_position=69088106 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-34(TTTTCTAAAAGG,-,0.00) |
| − | |transcript_name=ENST00000462445 | + | |transcript_name=ENST00000242465.4 ENST00000462445.1 D28395 BC022313 AK311873 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105301.1 | |tss_id=hg_105301.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P10124 |
}} | }} | ||
Latest revision as of 19:28, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 69088106 |
|---|---|
| End of the center position in the TSS region: | 69088107 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000242465.4 ENST00000462445.1 D28395 BC022313 AK311873 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5552 |
| All_trans: | HGNC:9361 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_002727 |
| Entrez ID: | 5552 |
| Nearest Unigene: | Hs.1908 |
| Nearest Refseq: | NM_002727 |
| Nearest Ensembl: | ENSG00000122862 |
| Gene Name: | serglycin |
| Gene Alias: | PPG|PRG|PRG1 |
| Gene Description: | serglycin |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(TTTTCTAAAAGG,-,0.00) |
