Difference between revisions of "TSS:Hg 105363.1"
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{{TSSDetail | {{TSSDetail | ||
|COLXIIIA1= | |COLXIIIA1= | ||
| − | |all_trans= | + | |all_trans=HGNC:2190 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=-17 | |distance=-17 | ||
| − | |distance_to_tss= | + | |distance_to_tss=64 |
|end=69801991 | |end=69801991 | ||
|end_of_center_position=69801970 | |end_of_center_position=69801970 | ||
|entrez_id=1305 | |entrez_id=1305 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=CMS19 | + | |gene_alias=CMS19{{!}}COLXIIIA1 |
|gene_description=collagen type XIII alpha 1 chain | |gene_description=collagen type XIII alpha 1 chain | ||
|gene_id=1305 | |gene_id=1305 | ||
| − | |gene_name=collagen type XIII alpha 1 | + | |gene_name=collagen type XIII alpha 1 chain |
|gene_source=HGNC:2190 | |gene_source=HGNC:2190 | ||
|gene_symbol=COL13A1 | |gene_symbol=COL13A1 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:2190 | |hgnc_mgi_id=HGNC:2190 | ||
|nearest_ensembl=ENSG00000197467 | |nearest_ensembl=ENSG00000197467 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_080801 |
|nearest_refseq=NM_005203 | |nearest_refseq=NM_005203 | ||
|nearest_unigene=Hs.695934 | |nearest_unigene=Hs.695934 | ||
| − | |num_trans= | + | |num_trans=1305 |
|species=human | |species=human | ||
|start=69801948 | |start=69801948 | ||
|start_of_center_position=69801969 | |start_of_center_position=69801969 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000354547.7 AJ293624 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105363.1 | |tss_id=hg_105363.1 | ||
Latest revision as of 19:29, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 69801969 |
|---|---|
| End of the center position in the TSS region: | 69801970 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000354547.7 AJ293624 |
|---|---|
| Distance: | -17 |
| Num_trans: | 1305 |
| All_trans: | HGNC:2190 |
TATA-Box annotation
| Distance to TSS: | 64 |
|---|---|
| Nearest PromoterID: | NM_080801 |
| Entrez ID: | 1305 |
| Nearest Unigene: | Hs.695934 |
| Nearest Refseq: | NM_005203 |
| Nearest Ensembl: | ENSG00000197467 |
| Gene Name: | collagen type XIII alpha 1 chain |
| Gene Alias: | CMS19|COLXIIIA1 |
| Gene Description: | collagen type XIII alpha 1 chain |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
