Difference between revisions of "TSS:Hg 112048.1"
From referenceTSS
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| Line 3: | Line 3: | ||
|O/E-2= | |O/E-2= | ||
|OE-2= | |OE-2= | ||
| − | |all_trans= | + | |all_trans=HGNC:19087 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
|distance=52 | |distance=52 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-57 |
|end=129964337 | |end=129964337 | ||
|end_of_center_position=129964332 | |end_of_center_position=129964332 | ||
|entrez_id=253738 | |entrez_id=253738 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=COE3 | + | |gene_alias=COE3{{!}}EBF-3{{!}}HADDS{{!}}O/E-2{{!}}OE-2 |
| − | |gene_description= | + | |gene_description=EBF transcription factor 3 |
|gene_id=253738 | |gene_id=253738 | ||
| − | |gene_name= | + | |gene_name=EBF transcription factor 3 |
|gene_source=HGNC:19087 | |gene_source=HGNC:19087 | ||
|gene_symbol=EBF3 | |gene_symbol=EBF3 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_001005463 | |nearest_refseq=NM_001005463 | ||
|nearest_unigene=Hs.591374 | |nearest_unigene=Hs.591374 | ||
| − | |num_trans= | + | |num_trans=253738 |
|species=human | |species=human | ||
|start=129964325 | |start=129964325 | ||
|start_of_center_position=129964331 | |start_of_center_position=129964331 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(TCCCATATATGG,-,0.00),-33(CCATATATGGCG,+,0.00) |
| − | |transcript_name=AK097335 | + | |transcript_name=ENST00000440978.2 ENST00000355311.10 AK097335 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_112048.1 | |tss_id=hg_112048.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=H0Y3W9 Q9H4W6 |
}} | }} | ||
Latest revision as of 21:54, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 129964331 |
|---|---|
| End of the center position in the TSS region: | 129964332 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000440978.2 ENST00000355311.10 AK097335 |
|---|---|
| Distance: | 52 |
| Num_trans: | 253738 |
| All_trans: | HGNC:19087 |
TATA-Box annotation
| Distance to TSS: | -57 |
|---|---|
| Nearest PromoterID: | NM_001005463 |
| Entrez ID: | 253738 |
| Nearest Unigene: | Hs.591374 |
| Nearest Refseq: | NM_001005463 |
| Nearest Ensembl: | ENSG00000108001 |
| Gene Name: | EBF transcription factor 3 |
| Gene Alias: | COE3|EBF-3|HADDS|O/E-2|OE-2 |
| Gene Description: | EBF transcription factor 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(TCCCATATATGG,-,0.00),-33(CCATATATGGCG,+,0.00) |
