Personal tools

Difference between revisions of "TSS:Mm 99686.1"

From referenceTSS

Jump to: navigation, search
 
(One intermediate revision by the same user not shown)
Line 4: Line 4:
 
|HAN11=
 
|HAN11=
 
|Wdr68=
 
|Wdr68=
|all_trans=BC048722:8 BC048165:11 AK137813:-20 ENSMUST00000106891.1:-29 AK080823:-29 AK165674:-45 AK154757:-45 AK005902:-50 ENSMUST00000058438.8:-57 NM_027946:-57 uc007lxy.1:-57 uc007lxz.1:-57 AK047435:-57
+
|all_trans=MGI:1919083
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.12
 
|cpg_percent=0.12
Line 13: Line 13:
 
|entrez_id=71833
 
|entrez_id=71833
 
|gc_percent=0.711443
 
|gc_percent=0.711443
|gene_alias=1700012F10Rik
+
|gene_alias=1700012F10Rik{{!}}2610037L01Rik{{!}}C86529{{!}}HAN11{{!}}Wdr68
 
|gene_description=DDB1 and CUL4 associated factor 7
 
|gene_description=DDB1 and CUL4 associated factor 7
 
|gene_id=71833
 
|gene_id=71833
Line 26: Line 26:
 
|nearest_refseq=NM_027946
 
|nearest_refseq=NM_027946
 
|nearest_unigene=Mm.307455
 
|nearest_unigene=Mm.307455
|num_trans=13
+
|num_trans=71833
 
|species=mouse
 
|species=mouse
 
|start=106036928
 
|start=106036928

Latest revision as of 19:31, 28 July 2021

Basic information about the TSS


TSS ID:mm_99686.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:106036928
End:106036945
Strand:+
TSS Score:1
Start of the center position in the TSS region:106036936
End of the center position in the TSS region:106036937



Gene and protein annotation


Transcript_name:BC048722
Distance:8
GeneID:71833
HGNC/MGI_ID:MGI:1919083
UniProt_ID:
Gene_name:DDB1 and CUL4 associated factor 7
Gene_symbol:Dcaf7
Gene_synonyms:1700012F10Rik 2610037L01Rik Wdr68
Gene_source:MGI:1919083



Transcript annotation


Transcript_name:BC048722
Distance:8
Num_trans:71833
All_trans:MGI:1919083



TATA-Box annotation


Distance to TSS:65
Nearest PromoterID:NM_027946
Entrez ID:71833
Nearest Unigene:Mm.307455
Nearest Refseq:NM_027946
Nearest Ensembl:ENSMUSG00000049354
Gene Name:DDB1 and CUL4 associated factor 7
Gene Alias:1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68
Gene Description:DDB1 and CUL4 associated factor 7
Gene Type:protein-coding
CpG%:0.12
GC%:0.711443
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):