Difference between revisions of "TSS:Mm 99821.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 6: | Line 6: | ||
|Ccdc46= | |Ccdc46= | ||
|Macoco= | |Macoco= | ||
| − | |all_trans= | + | |all_trans=MGI:1923673 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 15: | Line 15: | ||
|entrez_id=76380 | |entrez_id=76380 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=1700001M19Rik | + | |gene_alias=1700001M19Rik{{!}}1700029K01Rik{{!}}8430407H02Rik{{!}}AV043680{{!}}AV207351{{!}}Ccdc46{{!}}Macoco |
|gene_description=centrosomal protein 112 | |gene_description=centrosomal protein 112 | ||
|gene_id=76380 | |gene_id=76380 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_029586 | |nearest_refseq=NM_029586 | ||
|nearest_unigene=Mm.344071 | |nearest_unigene=Mm.344071 | ||
| − | |num_trans= | + | |num_trans=76380 |
|species=mouse | |species=mouse | ||
|start=108682643 | |start=108682643 | ||
| Line 34: | Line 34: | ||
|strand=+ | |strand=+ | ||
|transcript_name=BC048677 | |transcript_name=BC048677 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_99821.1 | |tss_id=mm_99821.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 19:34, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 108682647 |
|---|---|
| End of the center position in the TSS region: | 108682648 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC048677 |
|---|---|
| Distance: | -7 |
| Num_trans: | 76380 |
| All_trans: | MGI:1923673 |
TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_029586 |
| Entrez ID: | 76380 |
| Nearest Unigene: | Mm.344071 |
| Nearest Refseq: | NM_029586 |
| Nearest Ensembl: | ENSMUSG00000020728 |
| Gene Name: | centrosomal protein 112 |
| Gene Alias: | 1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco |
| Gene Description: | centrosomal protein 112 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
