Difference between revisions of "TSS:Mm 161014.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:2443893 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| − | |distance= | + | |distance=78 |
|distance_to_tss=479 | |distance_to_tss=479 | ||
|end=119229051 | |end=119229051 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:2443893 | |hgnc_mgi_id=MGI:2443893 | ||
|nearest_ensembl=ENSMUSG00000039963 | |nearest_ensembl=ENSMUSG00000039963 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001364767 |
|nearest_refseq=NM_175430 | |nearest_refseq=NM_175430 | ||
|nearest_unigene=Mm.189885 | |nearest_unigene=Mm.189885 | ||
| − | |num_trans= | + | |num_trans=207607 |
|species=mouse | |species=mouse | ||
|start=119229050 | |start=119229050 | ||
|start_of_center_position=119229050 | |start_of_center_position=119229050 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENSMUST00000053440.7 AK054172 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_161014.1 | |tss_id=mm_161014.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q8BI79 | + | |uniprot_id=Q8BI79 |
}} | }} | ||
Latest revision as of 08:52, 27 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 119229050 |
|---|---|
| End of the center position in the TSS region: | 119229051 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000053440.7 AK054172 |
|---|---|
| Distance: | 78 |
| Num_trans: | 207607 |
| All_trans: | MGI:2443893 |
TATA-Box annotation
| Distance to TSS: | 479 |
|---|---|
| Nearest PromoterID: | NM_001364767 |
| Entrez ID: | 207607 |
| Nearest Unigene: | Mm.189885 |
| Nearest Refseq: | NM_175430 |
| Nearest Ensembl: | ENSMUSG00000039963 |
| Gene Name: | coiled-coil domain containing 40 |
| Gene Alias: | B930008I02Rik |
| Gene Description: | coiled-coil domain containing 40 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
