Difference between revisions of "TSS:Hg 41131.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|RNF62= | |RNF62= | ||
| − | |all_trans=ENST00000447550 | + | |all_trans=NM_001378008:0 NM_001378007:0 NR_165360:0 ENST00000447550.1:-17 ENST00000567514.1:-56 |
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=3906 |
|end=12561003 | |end=12561003 | ||
|end_of_center_position=12560994 | |end_of_center_position=12560994 | ||
|entrez_id=23609 | |entrez_id=23609 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
| − | |gene_alias=HSPC070 | + | |gene_alias=HSPC070{{!}}RNF62 |
|gene_description=makorin ring finger protein 2 | |gene_description=makorin ring finger protein 2 | ||
|gene_id=100129480 | |gene_id=100129480 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_014160 | |nearest_refseq=NM_014160 | ||
|nearest_unigene=Hs.591666 | |nearest_unigene=Hs.591666 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=12560983 | |start=12560983 | ||
|start_of_center_position=12560993 | |start_of_center_position=12560993 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001378007.1 NM_001378008.1 NR_165360.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_41131.1 | |tss_id=hg_41131.1 | ||
Latest revision as of 21:26, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 12560993 |
|---|---|
| End of the center position in the TSS region: | 12560994 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_001378007.1 NM_001378008.1 NR_165360.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | NM_001378008:0 NM_001378007:0 NR_165360:0 ENST00000447550.1:-17 ENST00000567514.1:-56 |
TATA-Box annotation
| Distance to TSS: | 3906 |
|---|---|
| Nearest PromoterID: | NM_014160 |
| Entrez ID: | 23609 |
| Nearest Unigene: | Hs.591666 |
| Nearest Refseq: | NM_014160 |
| Nearest Ensembl: | ENSG00000075975 |
| Gene Name: | MKRN2 opposite strand |
| Gene Alias: | HSPC070|RNF62 |
| Gene Description: | makorin ring finger protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
