Difference between revisions of "TSS:Hg 100581.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=1793 |entrez_id=9853 |gc_percent=0.487562 |gene_alias=Iporin |gene_description=RUN and SH3 domain containing 2 |gene_name=RUSC2...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |MRT61= | ||
| + | |all_trans=ENST00000660258.1:-342 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance_to_tss= | + | |distance=-342 |
| + | |distance_to_tss=1515 | ||
| + | |end=35491627 | ||
| + | |end_of_center_position=35491626 | ||
|entrez_id=9853 | |entrez_id=9853 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=Iporin | + | |gene_alias=Iporin{{!}}MRT61 |
|gene_description=RUN and SH3 domain containing 2 | |gene_description=RUN and SH3 domain containing 2 | ||
|gene_name=RUSC2 | |gene_name=RUSC2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000198853 | |nearest_ensembl=ENSG00000198853 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001330740 |
|nearest_refseq=NM_014806 | |nearest_refseq=NM_014806 | ||
|nearest_unigene=Hs.493796 | |nearest_unigene=Hs.493796 | ||
| − | |tata_box= | + | |num_trans=1 |
| + | |species=human | ||
| + | |start=35491624 | ||
| + | |start_of_center_position=35491625 | ||
| + | |strand=- | ||
| + | |tata_box=-34(GACTTTATAAAG,-,0.00),-32(CTTTATAAAGAC,+,0.00) | ||
| + | |transcript_name=ENST00000660258.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100581.1 | |tss_id=hg_100581.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:20, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35491625 |
|---|---|
| End of the center position in the TSS region: | 35491626 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000660258.1 |
|---|---|
| Distance: | -342 |
| Num_trans: | 1 |
| All_trans: | ENST00000660258.1:-342 |
TATA-Box annotation
| Distance to TSS: | 1515 |
|---|---|
| Nearest PromoterID: | NM_001330740 |
| Entrez ID: | 9853 |
| Nearest Unigene: | Hs.493796 |
| Nearest Refseq: | NM_014806 |
| Nearest Ensembl: | ENSG00000198853 |
| Gene Name: | RUSC2 |
| Gene Alias: | Iporin|MRT61 |
| Gene Description: | RUN and SH3 domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GACTTTATAAAG,-,0.00),-32(CTTTATAAAGAC,+,0.00) |
